Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0218200-00 | |
| Os05t0210600-01 | |
| Os05t0587300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | Os01t0218200-00 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | Os05t0210600-01 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | Os05t0587300-01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22390 | Sorghum | cytosol | 85.84 | 85.84 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 83.19 | 83.19 |
| Os01t0731000-01 | Rice | plasma membrane | 83.19 | 83.19 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 82.3 | 82.3 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 82.3 | 82.3 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 73.45 | 79.05 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 80.53 | 77.78 |
| Os09t0345000-02 | Rice | cytosol | 76.11 | 74.14 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 73.45 | 72.81 |
| AT1G53400.1 | Thale cress | cytosol | 72.57 | 71.93 |
| CDY24097 | Canola | cytosol | 72.57 | 71.93 |
| Bra039670.1-P | Field mustard | cytosol | 72.57 | 71.93 |
| KRH27369 | Soybean | cytosol | 71.68 | 71.05 |
| CDY60203 | Canola | cytosol | 71.68 | 71.05 |
| Solyc02g072100.2.1 | Tomato | cytosol | 71.68 | 71.05 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 69.03 | 70.27 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 69.91 | 69.3 |
| Bra038123.1-P | Field mustard | cytosol | 69.91 | 69.3 |
| PGSC0003DMT400073258 | Potato | cytosol | 69.91 | 69.3 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 45.13 | 68.92 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 67.26 | 68.47 |
| CDY24099 | Canola | cytosol | 69.03 | 68.42 |
| PGSC0003DMT400018283 | Potato | cytosol | 68.14 | 66.96 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 83.19 | 64.38 |
| Solyc07g062290.2.1 | Tomato | cytosol | 65.49 | 64.35 |
| Zm00001d038753_P002 | Maize | cytosol | 69.91 | 52.67 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 39.82 | 46.88 |
Protein Annotations
| Gene3D:1.20.225.20 | MapMan:35.2 | EntrezGene:4339404 | ProteinID:AAS72343.1 | ProteinID:AAU43969.1 | EMBL:AK063846 |
| ProteinID:BAF18036.1 | ProteinID:BAS95016.1 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | ProteinID:EEE64448.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0043130 | InterPro:IPR038169 | EnsemblPlantsGene:Os05g0529400 | EnsemblPlants:Os05t0529400-01 |
| PFAM:PF16455 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | UniProt:Q75K68 | UniParc:UPI0000350364 | RefSeq:XP_015640373.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to ubiquitin domain containing 1. (Os05t0529400-01);Similar to ubiquitin domain containing 1. (Os05t0529400-02)
Coordinates
chr5:+:26292353..26294611
Molecular Weight (calculated)
12618.0 Da
IEP (calculated)
7.412
GRAVY (calculated)
-0.643
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKV DENSKKLKKP KPWKHTQAIT PTQLSKMREE FWDTAPHYGG QKEIWDALRA AAEAELPLAQ TIVNSAGIVV SNSDMTLCYD ERGAKYELPK
101: YVLSEPTNLI REP
101: YVLSEPTNLI REP
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.