Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- peroxisome 1
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0028g02240.t01 | |
| VIT_18s0001g09830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | VIT_12s0028g02240.t01 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | VIT_18s0001g09830.t01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27369 | Soybean | cytosol | 88.6 | 88.6 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 84.21 | 84.21 |
| CDY60203 | Canola | cytosol | 79.82 | 79.82 |
| AT1G53400.1 | Thale cress | cytosol | 78.95 | 78.95 |
| Bra038123.1-P | Field mustard | cytosol | 78.07 | 78.07 |
| PGSC0003DMT400018283 | Potato | cytosol | 77.19 | 76.52 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 70.18 | 76.19 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 75.44 | 76.11 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 75.44 | 76.11 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 75.44 | 76.11 |
| CDY24097 | Canola | cytosol | 75.44 | 75.44 |
| Bra039670.1-P | Field mustard | cytosol | 75.44 | 75.44 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 76.32 | 74.36 |
| Solyc07g062290.2.1 | Tomato | cytosol | 73.68 | 73.04 |
| TraesCS5B01G184800.1 | Wheat | cytosol | 75.44 | 72.88 |
| TraesCS5A01G186400.1 | Wheat | cytosol | 75.44 | 72.88 |
| CDY24099 | Canola | cytosol | 72.81 | 72.81 |
| Zm00001d043565_P001 | Maize | cytosol | 71.93 | 72.57 |
| KXG22390 | Sorghum | cytosol | 71.93 | 72.57 |
| TraesCS5D01G191600.1 | Wheat | cytosol | 74.56 | 72.03 |
| EES03565 | Sorghum | cytosol | 71.05 | 71.68 |
| Os01t0731000-01 | Rice | plasma membrane | 70.18 | 70.8 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 69.3 | 69.91 |
| Os05t0529400-01 | Rice | cytosol | 69.3 | 69.91 |
| Os09t0345000-02 | Rice | cytosol | 70.18 | 68.97 |
| GSMUA_Achr2P15540_001 | Banana | cytosol | 68.42 | 68.42 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 71.93 | 67.21 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 42.11 | 64.86 |
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 68.42 | 63.93 |
| EER98775 | Sorghum | cytosol | 67.54 | 63.11 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 69.3 | 61.24 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 75.44 | 58.9 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 71.05 | 56.25 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 70.18 | 55.56 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 44.74 | 53.12 |
| Zm00001d038753_P002 | Maize | cytosol | 58.77 | 44.67 |
Protein Annotations
| Gene3D:1.20.225.20 | EntrezGene:100267634 | wikigene:100267634 | MapMan:35.2 | UniProt:A5AGQ0 | EMBL:AM426373 |
| ProteinID:CAN66729 | ProteinID:CAN66729.1 | ProteinID:CBI20170 | ProteinID:CBI20170.3 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf |
| EMBL:FN595229 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0043130 | InterPro:IPR038169 |
| EntrezGene:LOC100267634 | wikigene:LOC100267634 | PFAM:PF16455 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | UniParc:UPI000151E869 |
| ArrayExpress:VIT_19s0014g01000 | EnsemblPlantsGene:VIT_19s0014g01000 | EnsemblPlants:VIT_19s0014g01000.t01 | unigene:Vvi.10757 | unigene:Vvi.20734 | RefSeq:XP_002285516 |
| RefSeq:XP_002285516.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:1048149..1053488
Molecular Weight (calculated)
12605.0 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.553
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSSQTK GDGTVKKIRK PKPWKNPQPL TKTQLMQMRD EFWDTAPHYG GQKEIWDALR AAAEADLTLA QAIVDSAGVI VQSADLTICY DERGAKYELP
101: HYVLSEPTNL IRDG
101: HYVLSEPTNL IRDG
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.