Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G352200.1 | Wheat | cytosol | 97.35 | 97.35 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 96.46 | 96.46 |
| KXG22390 | Sorghum | cytosol | 88.5 | 88.5 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 83.19 | 83.19 |
| Os05t0529400-01 | Rice | cytosol | 82.3 | 82.3 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 74.34 | 80.0 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 81.42 | 78.63 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 78.76 | 78.07 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 76.11 | 77.48 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 74.34 | 75.68 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 76.11 | 75.44 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 97.35 | 75.34 |
| KRH27369 | Soybean | cytosol | 75.22 | 74.56 |
| CDY60203 | Canola | cytosol | 74.34 | 73.68 |
| AT1G53400.1 | Thale cress | cytosol | 73.45 | 72.81 |
| Bra038123.1-P | Field mustard | cytosol | 72.57 | 71.93 |
| CDY24097 | Canola | cytosol | 72.57 | 71.93 |
| Bra039670.1-P | Field mustard | cytosol | 72.57 | 71.93 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 46.9 | 71.62 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 75.22 | 69.67 |
| Solyc02g072100.2.1 | Tomato | cytosol | 69.91 | 69.3 |
| CDY24099 | Canola | cytosol | 69.91 | 69.3 |
| PGSC0003DMT400018283 | Potato | cytosol | 69.03 | 67.83 |
| PGSC0003DMT400073258 | Potato | cytosol | 68.14 | 67.54 |
| Solyc07g062290.2.1 | Tomato | cytosol | 66.37 | 65.22 |
| Zm00001d038753_P002 | Maize | cytosol | 73.45 | 55.33 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 42.48 | 50.0 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G081490.1 | EnsemblPlantsGene:HORVU1Hr1G081490 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 |
| PFAM:PF16455 | UniParc:UPI0002950851 | UniProt:M0XFH8 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr1H:+:527800670..527806569
Molecular Weight (calculated)
12544.7 Da
IEP (calculated)
4.844
GRAVY (calculated)
-0.635
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKV DESSKNLRKP KPWKHTQPIT PAQLKQMRDE FWDTAPHYGG QKEIWDALQA ATEADLTLAQ TIVDSAGIIV SNPDLTLCYD ERGAKYELPN
101: YVLSEPTNLV RDG
101: YVLSEPTNLV RDG
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.