Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G352200.1 | Wheat | cytosol | 77.4 | 100.0 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 76.71 | 99.11 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 75.34 | 97.35 |
| KXG22390 | Sorghum | cytosol | 69.18 | 89.38 |
| Os05t0529400-01 | Rice | cytosol | 64.38 | 83.19 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 58.22 | 80.95 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 63.7 | 79.49 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 61.64 | 78.95 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 58.9 | 77.48 |
| TraesCS5B01G184800.1 | Wheat | cytosol | 62.33 | 77.12 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 57.53 | 75.68 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 58.9 | 75.44 |
| KRH27369 | Soybean | cytosol | 58.22 | 74.56 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 65.75 | 74.42 |
| CDY60203 | Canola | cytosol | 57.53 | 73.68 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 36.99 | 72.97 |
| AT1G53400.1 | Thale cress | cytosol | 56.85 | 72.81 |
| Bra038123.1-P | Field mustard | cytosol | 56.16 | 71.93 |
| CDY24097 | Canola | cytosol | 56.16 | 71.93 |
| Bra039670.1-P | Field mustard | cytosol | 56.16 | 71.93 |
| Solyc02g072100.2.1 | Tomato | cytosol | 54.11 | 69.3 |
| CDY24099 | Canola | cytosol | 54.11 | 69.3 |
| PGSC0003DMT400018283 | Potato | cytosol | 53.42 | 67.83 |
| PGSC0003DMT400073258 | Potato | cytosol | 52.74 | 67.54 |
| Solyc07g062290.2.1 | Tomato | cytosol | 51.37 | 65.22 |
| Zm00001d038753_P002 | Maize | cytosol | 56.85 | 55.33 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 32.19 | 48.96 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G363900.2 | EnsemblPlantsGene:TraesCS1B01G363900 | Gene3D:1.20.225.20 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 |
| PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1B:+:592648560..592652876
Molecular Weight (calculated)
16105.9 Da
IEP (calculated)
4.401
GRAVY (calculated)
-0.353
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKV DESSKNLRKP KPWKHTQPIT PAQLKQMRDE FWDTAPHYGG QKEIWDALRA ATDADLTLAQ TIVDSAGIIV SNPDLTLCYD ERGESELLFS
101: LSQVSLFCSA VFSLETNFCG DCMDAGAKYE LPNYVLSEPT NLIRDG
101: LSQVSLFCSA VFSLETNFCG DCMDAGAKYE LPNYVLSEPT NLIRDG
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.