CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53400.1	CDY42827	AT2G42580.1	19000166
AT1G53400.1	CDY51514	AT2G42580.1	19000166
AT1G53400.1	CDY55390	AT2G42580.1	19000166
AT1G53400.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24097	Canola	cytosol	61.46	51.75
AT1G53400.1	Thale cress	cytosol	60.42	50.88
CDY60203	Canola	cytosol	59.38	50.0
CDY24099	Canola	cytosol	58.33	49.12
VIT_19s0014g01000.t01	Wine grape	cytosol	53.12	44.74
KRH27369	Soybean	cytosol	53.12	44.74
TraesCS5B01G184800.1	Wheat	cytosol	53.12	43.22
TraesCS5A01G186400.1	Wheat	cytosol	53.12	43.22
HORVU1Hr1G081490.1	Barley	cytosol	50.0	42.48
TraesCS5D01G191600.1	Wheat	cytosol	52.08	42.37
Os09t0345000-02	Rice	cytosol	51.04	42.24
TraesCS1A01G349000.1	Wheat	cytosol	48.96	41.59
TraesCS1D01G352200.1	Wheat	cytosol	48.96	41.59
HORVU3Hr1G069400.1	Barley	cytosol	48.96	41.59
GSMUA_Achr3P31840_001	Banana	cytosol	50.0	41.03
EES03565	Sorghum	cytosol	47.92	40.71
KXG22390	Sorghum	cytosol	47.92	40.71
Os05t0529400-01	Rice	cytosol	46.88	39.82
Zm00001d043565_P001	Maize	cytosol	46.88	39.82
GSMUA_Achr7P24870_001	Banana	cytosol	42.71	39.05
CDY60536	Canola	cytosol	46.88	38.14
EER98775	Sorghum	cytosol	47.92	37.7
PGSC0003DMT400018283	Potato	cytosol	44.79	37.39
Os01t0731000-01	Rice	plasma membrane	43.75	37.17
HORVU5Hr1G041520.2	Barley	mitochondrion	46.88	36.89
Zm00001d005631_P001	Maize	mitochondrion, plasma membrane	46.88	36.89
TraesCS3B01G315300.2	Wheat	cytosol	47.92	35.66
Solyc07g062290.2.1	Tomato	cytosol	42.71	35.65
Zm00001d039399_P001	Maize	cytosol, nucleus, plastid	27.08	35.14
GSMUA_Achr2P15540_001	Banana	cytosol	41.67	35.09
CDX96797	Canola	cytosol, mitochondrion, nucleus	41.67	35.09
CDX83930	Canola	cytosol, mitochondrion, nucleus	41.67	35.09
TraesCS3A01G281600.1	Wheat	cytosol, endoplasmic reticulum, plastid	50.0	33.33
TraesCS3D01G281600.2	Wheat	cytosol, endoplasmic reticulum, plastid	50.0	33.33
TraesCS1B01G363900.2	Wheat	cytosol	48.96	32.19
CDX81793	Canola	cytosol	36.46	28.23
CDY23106	Canola	cytosol	32.29	23.48
Zm00001d038753_P002	Maize	cytosol	33.33	21.33

Protein Annotations

EnsemblPlants:CDY62073	EnsemblPlantsGene:GSBRNA2T00035918001	GO:A0A078J994	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0043130	InterPro:DC-UbP/UBTD2_N	PANTHER:PTHR13609	PANTHER:PTHR13609:SF13	PFAM:PF16455	ProteinID:CDY62073
ProteinID:CDY62073.1	SEG:seg	UniParc:UPI0004EE2B44	UniProt:A0A078J994	MapMan:35.2	:

Description

BnaC06g41460DBnaC06g41460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J994]

Coordinates

chrLK034092:-:8556..10336

Molecular Weight (calculated)

11008.5 Da

IEP (calculated)

10.267

GRAVY (calculated)

-0.388

Length

96 amino acids

Sequence
(BLAST)

1: MGCAGSTQWQ AEGPVKKIRK PKPFRTLLLT MAVRKRYGMH FVLLLKLTYL LRKQSWTGAG VIAQNNDLTI CYDERGAKYE RTKYVLSEPT NLVEES

Best Arabidopsis Sequence Match ( AT1G53400.1 )
(BLAST)

001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN

Arabidopsis Description

F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.