Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96797 | Canola | cytosol, mitochondrion, nucleus | 76.61 | 83.33 |
| AT1G16960.1 | Thale cress | nucleus | 75.81 | 82.46 |
| CDX83930 | Canola | cytosol, mitochondrion, nucleus | 75.81 | 82.46 |
| CDY24097 | Canola | cytosol | 59.68 | 64.91 |
| CDY60203 | Canola | cytosol | 57.26 | 62.28 |
| CDY24099 | Canola | cytosol | 54.84 | 59.65 |
| CDY60536 | Canola | cytosol | 53.23 | 55.93 |
| CDY23106 | Canola | cytosol | 42.74 | 40.15 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 28.23 | 36.46 |
Protein Annotations
| EnsemblPlants:CDX81793 | EnsemblPlantsGene:GSBRNA2T00136733001 | Gene3D:1.20.225.20 | GO:A0A078D3A5 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf |
| InterPro:IPR038169 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:CDX81793 | ProteinID:CDX81793.1 |
| SEG:seg | UniParc:UPI0004EF224C | MapMan:35.2 | : | : | : |
Description
BnaC08g38080D
Coordinates
chrLK031826:+:811356..813107
Molecular Weight (calculated)
14266.2 Da
IEP (calculated)
7.507
GRAVY (calculated)
-0.382
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MARLVLGTWY LVEADGRKEK IRRPKTWKHP QPISRAELTQ MGEEFWDTAP HYGGKKEIWD ALRAAAEEDD LSLAQTVIES AGVVVQNADL TICYDEKVIF
101: FWLGSKYKLP KYVLRDPSNL ITIK
101: FWLGSKYKLP KYVLRDPSNL ITIK
001: MGCSSSRTIA EGKKEKIRRP KTWKHPQPIS RDELTQMREE FWDTAPHYGG KKEIWDALRA AAEEDDLSLA QTILESAGVI VQNTDLTICY DEKGSKYELP
101: KYVLRDPSNL IPTK
101: KYVLRDPSNL IPTK
Arabidopsis Description
At1g16960 [Source:UniProtKB/TrEMBL;Acc:Q9FZ55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.