Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60536 | Canola | cytosol | 61.36 | 68.64 |
| AT5G45740.1 | Thale cress | nucleus | 55.3 | 61.86 |
| CDY24097 | Canola | cytosol | 46.21 | 53.51 |
| CDY60203 | Canola | cytosol | 45.45 | 52.63 |
| CDY24099 | Canola | cytosol | 44.7 | 51.75 |
| CDX83930 | Canola | cytosol, mitochondrion, nucleus | 43.18 | 50.0 |
| CDX96797 | Canola | cytosol, mitochondrion, nucleus | 43.18 | 50.0 |
| CDX81793 | Canola | cytosol | 40.15 | 42.74 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 23.48 | 32.29 |
Protein Annotations
| EnsemblPlants:CDY23106 | EnsemblPlantsGene:GSBRNA2T00021591001 | Gene3D:1.20.225.20 | GO:A0A078GCK7 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:Fil_hemagglutn_20-aa_x2_rpt | InterPro:IPR038169 |
| PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:CDY23106 | ProteinID:CDY23106.1 | SEG:seg |
| TIGRFAMs:TIGR01731 | UniParc:UPI0004EBEE5A | UniProt:A0A078GCK7 | MapMan:35.2 | : | : |
Description
BnaC09g18600DBnaC09g18600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCK7]
Coordinates
chrLK032140:+:59800..61453
Molecular Weight (calculated)
14967.7 Da
IEP (calculated)
4.366
GRAVY (calculated)
-0.300
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMREEFWDT SPHYGGQREI WDALRAAAEA ELTLAQTIID SAGVIVQGRD LTLCWDERGA KYELPRYVLK IWDALRAAAE AELTLAQTII DSAGVIVQGR
101: DLTLCWDERG AKYELPRYVL SEPTNLIREQ GQ
101: DLTLCWDERG AKYELPRYVL SEPTNLIREQ GQ
001: MGCIGSSQAR NEGGAKRKKI MKPKPWAHTE PITRAQLTNM REEFWDTSPH YGGQREIWEA LRAAAEADLK LAQTIVDSAG VIVQNRDLTL CWDERGARYE
101: LPRYVLSEPT NLIREEGQ
101: LPRYVLSEPT NLIREEGQ
Arabidopsis Description
Ubiquitin domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KEM2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.