Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- peroxisome 1
- plastid 1
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017593.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| AT5G45740.1 | Thale cress | nucleus | 89.83 | 89.83 |
| CDY24097 | Canola | cytosol | 66.1 | 68.42 |
| CDY60203 | Canola | cytosol | 66.1 | 68.42 |
| CDY24099 | Canola | cytosol | 63.56 | 65.79 |
| CDX83930 | Canola | cytosol, mitochondrion, nucleus | 61.86 | 64.04 |
| CDX96797 | Canola | cytosol, mitochondrion, nucleus | 61.86 | 64.04 |
| CDY23106 | Canola | cytosol | 68.64 | 61.36 |
| CDX81793 | Canola | cytosol | 55.93 | 53.23 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 38.14 | 46.88 |
Protein Annotations
| EnsemblPlants:CDY60536 | EnsemblPlantsGene:GSBRNA2T00029739001 | Gene3D:1.20.225.20 | GO:A0A078J3P6 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:CDY60536 | ProteinID:CDY60536.1 | SEG:seg | UniParc:UPI000254254D |
| UniProt:A0A078J3P6 | MapMan:35.2 | : | : | : | : |
Description
BnaAnng16980DBnaAnng16980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3P6]
Coordinates
chrLK033890:+:28798..29626
Molecular Weight (calculated)
13376.9 Da
IEP (calculated)
6.786
GRAVY (calculated)
-0.692
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCIGSSHAR NEGGARREKI KKPKPWAHTE PITRAQLMNM REEFWDTSPH YGGQREIWDA LRAAAEAELT LAQTIIDSAG VIVQGRDLTL CWDERGAKYE
101: LPRYVLSEPT NLIREQGQ
101: LPRYVLSEPT NLIREQGQ
001: MGCIGSSQAR NEGGAKRKKI MKPKPWAHTE PITRAQLTNM REEFWDTSPH YGGQREIWEA LRAAAEADLK LAQTIVDSAG VIVQNRDLTL CWDERGARYE
101: LPRYVLSEPT NLIREEGQ
101: LPRYVLSEPT NLIREEGQ
Arabidopsis Description
Ubiquitin domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KEM2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.