Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016622.1-P | Field mustard | cytosol, mitochondrion, nucleus | 99.12 | 99.12 |
| CDX83930 | Canola | cytosol, mitochondrion, nucleus | 99.12 | 99.12 |
| AT1G16960.1 | Thale cress | nucleus | 88.6 | 88.6 |
| CDX81793 | Canola | cytosol | 83.33 | 76.61 |
| CDY24097 | Canola | cytosol | 70.18 | 70.18 |
| CDY60203 | Canola | cytosol | 68.42 | 68.42 |
| CDY24099 | Canola | cytosol | 65.79 | 65.79 |
| CDY60536 | Canola | cytosol | 64.04 | 61.86 |
| CDY23106 | Canola | cytosol | 50.0 | 43.18 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 35.09 | 41.67 |
Protein Annotations
| EnsemblPlants:CDX96797 | EnsemblPlantsGene:GSBRNA2T00103030001 | Gene3D:1.20.225.20 | GO:A0A078E6X5 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf |
| InterPro:IPR038169 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:CDX96797 | ProteinID:CDX96797.1 |
| SEG:seg | UniParc:UPI0004EDB21C | MapMan:35.2 | : | : | : |
Description
BnaA08g23400D
Coordinates
chrLK031895:-:1005703..1006805
Molecular Weight (calculated)
12974.4 Da
IEP (calculated)
8.216
GRAVY (calculated)
-0.789
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCSSSTAKA EGRKEKIRRP KSWKHPQPIS RAELTQMREE FWDTAPHYGG KKEIWDALRA AAEEEDLSLA QTIIESAGVI VHNADLTICY DEKGSKYELP
101: KYVLRDPSNL IRTK
101: KYVLRDPSNL IRTK
001: MGCSSSRTIA EGKKEKIRRP KTWKHPQPIS RDELTQMREE FWDTAPHYGG KKEIWDALRA AAEEDDLSLA QTILESAGVI VQNTDLTICY DEKGSKYELP
101: KYVLRDPSNL IPTK
101: KYVLRDPSNL IPTK
Arabidopsis Description
At1g16960 [Source:UniProtKB/TrEMBL;Acc:Q9FZ55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.