Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83930 | Canola | cytosol, mitochondrion, nucleus | 89.47 | 89.47 |
| Bra016622.1-P | Field mustard | cytosol, mitochondrion, nucleus | 88.6 | 88.6 |
| CDX96797 | Canola | cytosol, mitochondrion, nucleus | 88.6 | 88.6 |
| CDX81793 | Canola | cytosol | 82.46 | 75.81 |
| AT1G53400.1 | Thale cress | cytosol | 68.42 | 68.42 |
| AT5G45740.1 | Thale cress | nucleus | 62.28 | 60.17 |
Protein Annotations
| Gene3D:1.20.225.20 | MapMan:35.2 | EntrezGene:838267 | UniProt:A0A178W8B5 | ProteinID:AAF99836.1 | ProteinID:AEE29526.1 |
| ArrayExpress:AT1G16960 | EnsemblPlantsGene:AT1G16960 | RefSeq:AT1G16960 | TAIR:AT1G16960 | RefSeq:AT1G16960-TAIR-G | EnsemblPlants:AT1G16960.1 |
| TAIR:AT1G16960.1 | EMBL:BT014794 | EMBL:BT015016 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0043130 | InterPro:IPR038169 | RefSeq:NP_173140.1 | ProteinID:OAP14677.1 |
| PFAM:PF16455 | PO:PO:0000293 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | UniProt:Q9FZ55 | UniParc:UPI00000A28D3 |
| SEG:seg | : | : | : | : | : |
Description
At1g16960 [Source:UniProtKB/TrEMBL;Acc:Q9FZ55]
Coordinates
chr1:+:5799741..5800887
Molecular Weight (calculated)
13022.4 Da
IEP (calculated)
6.526
GRAVY (calculated)
-0.816
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCSSSRTIA EGKKEKIRRP KTWKHPQPIS RDELTQMREE FWDTAPHYGG KKEIWDALRA AAEEDDLSLA QTILESAGVI VQNTDLTICY DEKGSKYELP
101: KYVLRDPSNL IPTK
101: KYVLRDPSNL IPTK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.