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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 2
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY60203 Canola cytosol 95.61 95.61
Bra038123.1-P Field mustard cytosol 93.86 93.86
Bra039670.1-P Field mustard cytosol 89.47 89.47
CDY24097 Canola cytosol 89.47 89.47
CDY24099 Canola cytosol 86.84 86.84
KRH27369 Soybean cytosol 83.33 83.33
VIT_19s0014g01000.t01 Wine grape cytosol 78.95 78.95
HORVU3Hr1G069400.1 Barley cytosol 74.56 75.22
Os09t0345000-02 Rice cytosol 76.32 75.0
TraesCS5B01G184800.1 Wheat cytosol 76.32 73.73
TraesCS5A01G186400.1 Wheat cytosol 76.32 73.73
TraesCS1A01G349000.1 Wheat cytosol 72.81 73.45
TraesCS1D01G352200.1 Wheat cytosol 72.81 73.45
HORVU1Hr1G081490.1 Barley cytosol 72.81 73.45
GSMUA_Achr7P24870_001 Banana cytosol 67.54 73.33
PGSC0003DMT400018283 Potato cytosol 73.68 73.04
TraesCS5D01G191600.1 Wheat cytosol 75.44 72.88
Os05t0529400-01 Rice cytosol 71.93 72.57
KXG22390 Sorghum cytosol 70.18 70.8
EES03565 Sorghum cytosol 70.18 70.8
Zm00001d043565_P001 Maize cytosol 70.18 70.8
Solyc07g062290.2.1 Tomato cytosol 71.05 70.43
GSMUA_Achr3P31840_001 Banana cytosol 71.93 70.09
AT5G45740.1 Thale cress nucleus 71.05 68.64
AT1G16960.1 Thale cress nucleus 68.42 68.42
Os01t0731000-01 Rice plasma membrane 67.54 68.14
HORVU5Hr1G041520.2 Barley mitochondrion 71.05 66.39
TraesCS3B01G315300.2 Wheat cytosol 73.68 65.12
GSMUA_Achr2P15540_001 Banana cytosol 64.91 64.91
Zm00001d005631_P001 Maize mitochondrion, plasma membrane 68.42 63.93
EER98775 Sorghum cytosol 67.54 63.11
Zm00001d039399_P001 Maize cytosol, nucleus, plastid 40.35 62.16
CDY62073 Canola cytosol, mitochondrion, nucleus 50.88 60.42
TraesCS3D01G281600.2 Wheat cytosol, endoplasmic reticulum, plastid 75.44 59.72
TraesCS3A01G281600.1 Wheat cytosol, endoplasmic reticulum, plastid 74.56 59.03
TraesCS1B01G363900.2 Wheat cytosol 72.81 56.85
Zm00001d038753_P002 Maize cytosol 58.77 44.67
Protein Annotations
Gene3D:1.20.225.20MapMan:35.2EntrezGene:841776UniProt:A0A178W898ProteinID:AAF69541.1ProteinID:AEE32937.1
EMBL:AF370164ArrayExpress:AT1G53400EnsemblPlantsGene:AT1G53400RefSeq:AT1G53400TAIR:AT1G53400RefSeq:AT1G53400-TAIR-G
EnsemblPlants:AT1G53400.1TAIR:AT1G53400.1EMBL:AY059126InterPro:DC-UbP/UBTD2_NInterPro:DC-UbP/UBTD2_N_sfGO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0043130InterPro:IPR038169RefSeq:NP_564630.1ProteinID:OAP13302.1
PFAM:PF16455PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293
PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PANTHER:PTHR13609
PANTHER:PTHR13609:SF13UniProt:Q9MAG2UniParc:UPI00000A3993:::
Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
Coordinates
chr1:+:19924660..19926631
Molecular Weight (calculated)
12707.0 Da
IEP (calculated)
5.227
GRAVY (calculated)
-0.625
Length
114 amino acids
Sequence
(BLAST)
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.