Factsheet for Bra039670.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53400.1	Bra000267.1-P	AT2G42580.1	19000166
AT1G53400.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24099	Canola	cytosol	92.98	92.98
AT1G53400.1	Thale cress	cytosol	89.47	89.47
Bra038123.1-P	Field mustard	cytosol	88.6	88.6
KRH27369	Soybean	cytosol	78.95	78.95
HORVU3Hr1G069400.1	Barley	cytosol	75.44	76.11
VIT_19s0014g01000.t01	Wine grape	cytosol	75.44	75.44
TraesCS1D01G352200.1	Wheat	cytosol	71.93	72.57
HORVU1Hr1G081490.1	Barley	cytosol	71.93	72.57
TraesCS1A01G349000.1	Wheat	cytosol	71.93	72.57
Os05t0529400-01	Rice	cytosol	71.93	72.57
Os09t0345000-02	Rice	cytosol	73.68	72.41
GSMUA_Achr7P24870_001	Banana	cytosol	66.67	72.38
TraesCS5B01G184800.1	Wheat	cytosol	74.56	72.03
TraesCS5A01G186400.1	Wheat	cytosol	74.56	72.03
TraesCS5D01G191600.1	Wheat	cytosol	73.68	71.19
Bra016622.1-P	Field mustard	cytosol, mitochondrion, nucleus	71.05	71.05
KXG22390	Sorghum	cytosol	70.18	70.8
Zm00001d043565_P001	Maize	cytosol	70.18	70.8
EES03565	Sorghum	cytosol	70.18	70.8
GSMUA_Achr3P31840_001	Banana	cytosol	71.05	69.23
Os01t0731000-01	Rice	plasma membrane	68.42	69.03
PGSC0003DMT400018283	Potato	cytosol	68.42	67.83
GSMUA_Achr2P15540_001	Banana	cytosol	66.67	66.67
Bra017593.1-P	Field mustard	cytosol	68.42	66.1
Solyc07g062290.2.1	Tomato	cytosol	65.79	65.22
HORVU5Hr1G041520.2	Barley	mitochondrion	69.3	64.75
TraesCS3B01G315300.2	Wheat	cytosol	72.81	64.34
EER98775	Sorghum	cytosol	67.54	63.11
Zm00001d005631_P001	Maize	mitochondrion, plasma membrane	67.54	63.11
Zm00001d039399_P001	Maize	cytosol, nucleus, plastid	40.35	62.16
TraesCS3A01G281600.1	Wheat	cytosol, endoplasmic reticulum, plastid	73.68	58.33
TraesCS3D01G281600.2	Wheat	cytosol, endoplasmic reticulum, plastid	73.68	58.33
TraesCS1B01G363900.2	Wheat	cytosol	71.93	56.16
Zm00001d038753_P002	Maize	cytosol	59.65	45.33

Protein Annotations

EnsemblPlants:Bra039670.1	EnsemblPlants:Bra039670.1-P	EnsemblPlantsGene:Bra039670	Gene3D:1.20.225.20	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0043130	InterPro:DC-UbP/UBTD2_N	InterPro:DC-UbP/UBTD2_N_sf	InterPro:IPR038169	PANTHER:PTHR13609
PANTHER:PTHR13609:SF13	PFAM:PF16455	UniParc:UPI0000EC7D7A	UniProt:M4FEZ8	MapMan:35.2	:

Description

AT1G53400 (E=3e-057) | unknown protein

Coordinates

chrA06:-:612255..614085

Molecular Weight (calculated)

12621.9 Da

IEP (calculated)

5.199

GRAVY (calculated)

-0.595

Length

114 amino acids

Sequence
(BLAST)

001: MGCAGSTQSQ AEGPVKKIRK PKPWKHTQPI SKAELVKMRE EFWDTAPHYG GTKEIWDALR AAAEADISLA QTIVDSAGVI VQNNDLTTCY DERGAKYDLP
101: KYVLSEPTNL VEES

Best Arabidopsis Sequence Match ( AT1G53400.1 )
(BLAST)

001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN

Arabidopsis Description

F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.