Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043565_P001 | Maize | cytosol | 83.19 | 83.19 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 83.19 | 83.19 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 92.92 | 81.4 |
| EES03565 | Sorghum | cytosol | 80.53 | 80.53 |
| Os01t0731000-01 | Rice | plasma membrane | 79.65 | 79.65 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 72.57 | 78.1 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 79.65 | 76.92 |
| CDY24097 | Canola | cytosol | 76.11 | 75.44 |
| Bra039670.1-P | Field mustard | cytosol | 76.11 | 75.44 |
| AT1G53400.1 | Thale cress | cytosol | 75.22 | 74.56 |
| CDY60203 | Canola | cytosol | 74.34 | 73.68 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 92.92 | 72.92 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 92.92 | 72.92 |
| Bra038123.1-P | Field mustard | cytosol | 73.45 | 72.81 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 72.57 | 71.93 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 69.91 | 71.17 |
| CDY24099 | Canola | cytosol | 71.68 | 71.05 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 69.03 | 70.27 |
| KRH27369 | Soybean | cytosol | 70.8 | 70.18 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 69.91 | 69.3 |
| PGSC0003DMT400018283 | Potato | cytosol | 68.14 | 66.96 |
| Solyc02g072100.2.1 | Tomato | cytosol | 66.37 | 65.79 |
| Solyc07g062290.2.1 | Tomato | cytosol | 65.49 | 64.35 |
| PGSC0003DMT400073258 | Potato | cytosol | 64.6 | 64.04 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 67.26 | 62.3 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 41.59 | 48.96 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G069400.1 | EnsemblPlantsGene:HORVU3Hr1G069400 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 |
| PFAM:PF16455 | SEG:seg | UniParc:UPI000B4730EA | UniProt:A0A287LIK0 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr3H:-:526160771..526164436
Molecular Weight (calculated)
12627.9 Da
IEP (calculated)
5.762
GRAVY (calculated)
-0.700
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKS DGSSKKLKKP KPWKHTQSIS PVELKQMREE FWDTTPHYGG QKEIWDALRA AAEADLSLSQ TIVDSAGIIV SNPDMTLCYD ERGAKYELPK
101: YVLSEPTNLI REE
101: YVLSEPTNLI REE
001: MGCSSSRTIA EGKKEKIRRP KTWKHPQPIS RDELTQMREE FWDTAPHYGG KKEIWDALRA AAEEDDLSLA QTILESAGVI VQNTDLTICY DEKGSKYELP
101: KYVLRDPSNL IPTK
101: KYVLRDPSNL IPTK
Arabidopsis Description
At1g16960 [Source:UniProtKB/TrEMBL;Acc:Q9FZ55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.