Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 96.53 | 96.53 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 72.92 | 92.92 |
| Zm00001d043565_P001 | Maize | cytosol | 70.14 | 89.38 |
| EES03565 | Sorghum | cytosol | 68.06 | 86.73 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 67.36 | 85.84 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 75.69 | 84.5 |
| Os01t0731000-01 | Rice | plasma membrane | 65.28 | 83.19 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 65.28 | 80.34 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 58.33 | 80.0 |
| TraesCS5A01G186400.1 | Wheat | cytosol | 61.11 | 74.58 |
| AT1G53400.1 | Thale cress | cytosol | 59.03 | 74.56 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 59.03 | 74.56 |
| CDY60203 | Canola | cytosol | 58.33 | 73.68 |
| CDY24097 | Canola | cytosol | 58.33 | 73.68 |
| Bra039670.1-P | Field mustard | cytosol | 58.33 | 73.68 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 56.25 | 72.97 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 56.25 | 72.97 |
| Bra038123.1-P | Field mustard | cytosol | 57.64 | 72.81 |
| KRH27369 | Soybean | cytosol | 57.64 | 72.81 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 56.25 | 71.05 |
| CDY24099 | Canola | cytosol | 55.56 | 70.18 |
| PGSC0003DMT400018283 | Potato | cytosol | 55.56 | 69.57 |
| Solyc02g072100.2.1 | Tomato | cytosol | 54.86 | 69.3 |
| PGSC0003DMT400073258 | Potato | cytosol | 53.47 | 67.54 |
| Solyc07g062290.2.1 | Tomato | cytosol | 53.47 | 66.96 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 33.33 | 50.0 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G281600.1 | EnsemblPlantsGene:TraesCS3A01G281600 | Gene3D:1.20.225.20 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 |
| PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3A:+:510297832..510300462
Molecular Weight (calculated)
15983.1 Da
IEP (calculated)
7.844
GRAVY (calculated)
-0.390
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKS DDSSKKLKKP KPWKHTQSIT PAQLKQMREE FWDTTPHYGG QKEIWDALRA AAEADLALAQ TIVDSAGIIV SNSDMTLCYD ERGKIIIFPC
101: IACIFSTALC FQNQNQWLGN SAAGAKYELP KYVLSEPTNL IREK
101: IACIFSTALC FQNQNQWLGN SAAGAKYELP KYVLSEPTNL IREK
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.