Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | EES01073 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | EES02247 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | OQU78515 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043565_P001 | Maize | cytosol | 94.69 | 94.69 |
| KXG22390 | Sorghum | cytosol | 89.38 | 89.38 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 75.22 | 80.95 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 80.53 | 80.53 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 83.19 | 80.34 |
| Os01t0731000-01 | Rice | plasma membrane | 79.65 | 79.65 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 72.57 | 73.87 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 72.57 | 73.87 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 84.07 | 73.64 |
| KRH27369 | Soybean | cytosol | 72.57 | 71.93 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 72.57 | 71.93 |
| CDY60203 | Canola | cytosol | 71.68 | 71.05 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 71.68 | 71.05 |
| CDY24097 | Canola | cytosol | 70.8 | 70.18 |
| Bra039670.1-P | Field mustard | cytosol | 70.8 | 70.18 |
| AT1G53400.1 | Thale cress | cytosol | 70.8 | 70.18 |
| Bra038123.1-P | Field mustard | cytosol | 69.91 | 69.3 |
| PGSC0003DMT400018283 | Potato | cytosol | 69.91 | 68.7 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 86.73 | 68.06 |
| EER98775 | Sorghum | cytosol | 72.57 | 67.21 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 84.96 | 66.67 |
| CDY24099 | Canola | cytosol | 67.26 | 66.67 |
| Solyc07g062290.2.1 | Tomato | cytosol | 66.37 | 65.22 |
| Solyc02g072100.2.1 | Tomato | cytosol | 65.49 | 64.91 |
| PGSC0003DMT400073258 | Potato | cytosol | 64.6 | 64.04 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 40.71 | 47.92 |
Protein Annotations
| EnsemblPlants:EES03565 | EnsemblPlantsGene:SORBI_3003G285800 | EntrezGene:8069834 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:EES03565 | ProteinID:EES03565.1 | RefSeq:XP_002458445.1 | SEG:seg |
| UniParc:UPI00016FE267 | UniProt:C5XJ26 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:61901895..61905628
Molecular Weight (calculated)
12535.9 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.622
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTLKP EDNGKKLKKP KPWKHTQAIT PAQLRQMRDE FWDTAPHYGG QKEIWDALRA AADSDLALAQ TIVDSAGIII SNSDMTLCYD ERGAKYELPK
101: YVLSEPTNLI KDG
101: YVLSEPTNLI KDG
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.