Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0218200-00 | |
| Os05t0210600-01 | |
| Os05t0587300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | Os01t0218200-00 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | Os05t0210600-01 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | Os05t0587300-01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043565_P001 | Maize | cytosol | 83.19 | 83.19 |
| Os05t0529400-01 | Rice | cytosol | 83.19 | 83.19 |
| EES03565 | Sorghum | cytosol | 79.65 | 79.65 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 79.65 | 79.65 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 70.8 | 76.19 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 76.11 | 73.5 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 82.3 | 72.09 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 69.03 | 70.27 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 69.03 | 70.27 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 70.8 | 70.18 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 70.8 | 70.18 |
| KRH27369 | Soybean | cytosol | 70.8 | 70.18 |
| Bra039670.1-P | Field mustard | cytosol | 69.03 | 68.42 |
| CDY24097 | Canola | cytosol | 69.03 | 68.42 |
| Os09t0345000-02 | Rice | cytosol | 69.91 | 68.1 |
| AT1G53400.1 | Thale cress | cytosol | 68.14 | 67.54 |
| PGSC0003DMT400018283 | Potato | cytosol | 68.14 | 66.96 |
| CDY60203 | Canola | cytosol | 67.26 | 66.67 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 83.19 | 65.28 |
| Bra038123.1-P | Field mustard | cytosol | 65.49 | 64.91 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 82.3 | 64.58 |
| Solyc07g062290.2.1 | Tomato | cytosol | 65.49 | 64.35 |
| PGSC0003DMT400073258 | Potato | cytosol | 64.6 | 64.04 |
| Solyc02g072100.2.1 | Tomato | cytosol | 64.6 | 64.04 |
| CDY24099 | Canola | cytosol | 64.6 | 64.04 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 37.17 | 43.75 |
Protein Annotations
| EnsemblPlants:Os01t0731000-01 | EnsemblPlantsGene:Os01g0731000 | EntrezGene:4324429 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:BAB63530.1 | ProteinID:BAF06061.2 | ProteinID:BAS74184.1 | ProteinID:EEE55337.1 |
| RefSeq:XP_015624552.1 | SEG:seg | UniParc:UPI00000A1BFF | UniProt:Q94EA5 | MapMan:35.2 | : |
Description
Similar to ubiquitin domain containing 1. (Os01t0731000-01)
Coordinates
chr1:-:30501605..30507193
Molecular Weight (calculated)
12614.9 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.701
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKT DDNSKKLKKP KPWKHNQAIT TTQLKQMRDE FWDTAPHYGG QKEIWDALRA AAEAELSLAQ TIVDSAGIIV SNSDMTICYD ERGAKYELPK
101: YVLSEPTNLI REG
101: YVLSEPTNLI REG
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.