Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03565 | Sorghum | cytosol | 94.69 | 94.69 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 83.19 | 83.19 |
| Os01t0731000-01 | Rice | plasma membrane | 83.19 | 83.19 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 83.19 | 80.34 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 74.34 | 80.0 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 50.44 | 77.03 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 86.73 | 75.97 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 74.34 | 75.68 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 74.34 | 75.68 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 73.45 | 72.81 |
| KRH27369 | Soybean | cytosol | 73.45 | 72.81 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 72.57 | 71.93 |
| CDY60203 | Canola | cytosol | 71.68 | 71.05 |
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 76.11 | 70.49 |
| AT1G53400.1 | Thale cress | cytosol | 70.8 | 70.18 |
| CDY24097 | Canola | cytosol | 70.8 | 70.18 |
| Bra039670.1-P | Field mustard | cytosol | 70.8 | 70.18 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 89.38 | 70.14 |
| Bra038123.1-P | Field mustard | cytosol | 69.91 | 69.3 |
| PGSC0003DMT400018283 | Potato | cytosol | 69.91 | 68.7 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 86.73 | 68.06 |
| CDY24099 | Canola | cytosol | 68.14 | 67.54 |
| Solyc07g062290.2.1 | Tomato | cytosol | 66.37 | 65.22 |
| Solyc02g072100.2.1 | Tomato | cytosol | 65.49 | 64.91 |
| PGSC0003DMT400073258 | Potato | cytosol | 64.6 | 64.04 |
| Zm00001d038753_P002 | Maize | cytosol | 73.45 | 55.33 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 39.82 | 46.88 |
Protein Annotations
| EMBL:EU972935 | EnsemblPlants:Zm00001d043565_P001 | EnsemblPlants:Zm00001d043565_T001 | EnsemblPlantsGene:Zm00001d043565 | EntrezGene:100285566 | Gene3D:1.20.225.20 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf |
| InterPro:IPR038169 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:ONM38479.1 | SEG:seg |
| UniParc:UPI000182F829 | UniProt:B6U6S0 | MapMan:35.2 | : | : | : |
Description
Ubiquitin domain-containing protein
Coordinates
chr3:+:204176864..204179956
Molecular Weight (calculated)
12509.7 Da
IEP (calculated)
5.719
GRAVY (calculated)
-0.666
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKT DDNGKNLKKP KPWKHTQAIT PAQLRQMRDE FWDTAPHYGG QKEIWDALRA AADSDLALAQ TIVDSAGIIV SNSDMTLCYD ERGAKYELPK
101: YVLSEPTNLI RDG
101: YVLSEPTNLI RDG
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.