Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 96.53 | 96.53 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 72.92 | 92.92 |
| Zm00001d043565_P001 | Maize | cytosol | 68.06 | 86.73 |
| EES03565 | Sorghum | cytosol | 66.67 | 84.96 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 66.67 | 84.96 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 75.69 | 84.5 |
| Os01t0731000-01 | Rice | plasma membrane | 64.58 | 82.3 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 64.58 | 79.49 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 57.64 | 79.05 |
| AT1G53400.1 | Thale cress | cytosol | 59.72 | 75.44 |
| CDY60203 | Canola | cytosol | 59.03 | 74.56 |
| Bra038123.1-P | Field mustard | cytosol | 58.33 | 73.68 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 58.33 | 73.68 |
| CDY24097 | Canola | cytosol | 58.33 | 73.68 |
| Bra039670.1-P | Field mustard | cytosol | 58.33 | 73.68 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 56.25 | 72.97 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 56.25 | 72.97 |
| TraesCS5D01G191600.1 | Wheat | cytosol | 59.72 | 72.88 |
| KRH27369 | Soybean | cytosol | 56.94 | 71.93 |
| CDY24099 | Canola | cytosol | 56.25 | 71.05 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 55.56 | 70.18 |
| PGSC0003DMT400018283 | Potato | cytosol | 54.86 | 68.7 |
| Solyc02g072100.2.1 | Tomato | cytosol | 54.17 | 68.42 |
| PGSC0003DMT400073258 | Potato | cytosol | 52.78 | 66.67 |
| Solyc07g062290.2.1 | Tomato | cytosol | 52.78 | 66.09 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 33.33 | 50.0 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G281600.2 | EnsemblPlantsGene:TraesCS3D01G281600 | Gene3D:1.20.225.20 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 |
| PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3D:+:389631331..389633814
Molecular Weight (calculated)
16027.0 Da
IEP (calculated)
5.207
GRAVY (calculated)
-0.387
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKS DDSSKKLKKP KPWKHTQSIT PAQLKQMREE FWDTTPHYGG QKEIWDALRA AAEADLSLAQ PIVDSAGIIV SNSDMTLCYD ERGKIIIFPC
101: IACIFSTALC FQDQNQWLGN SAAGAKYELP KYVLSEPTNL IWEE
101: IACIFSTALC FQDQNQWLGN SAAGAKYELP KYVLSEPTNL IWEE
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.