Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G184800.1 | Wheat | cytosol | 99.15 | 99.15 |
| TraesCS5A01G186400.1 | Wheat | cytosol | 99.15 | 99.15 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 87.29 | 84.43 |
| Os09t0345000-02 | Rice | cytosol | 80.51 | 81.9 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 76.27 | 79.65 |
| KRH27369 | Soybean | cytosol | 74.58 | 77.19 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 71.19 | 75.68 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 71.19 | 75.68 |
| AT1G53400.1 | Thale cress | cytosol | 72.88 | 75.44 |
| CDY60203 | Canola | cytosol | 72.88 | 75.44 |
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 77.97 | 75.41 |
| EER98775 | Sorghum | cytosol | 77.12 | 74.59 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 72.03 | 74.56 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 72.03 | 74.56 |
| CDY24097 | Canola | cytosol | 71.19 | 73.68 |
| Bra039670.1-P | Field mustard | cytosol | 71.19 | 73.68 |
| Bra038123.1-P | Field mustard | cytosol | 71.19 | 73.68 |
| CDY24099 | Canola | cytosol | 70.34 | 72.81 |
| PGSC0003DMT400073258 | Potato | cytosol | 65.25 | 67.54 |
| PGSC0003DMT400018283 | Potato | cytosol | 65.25 | 66.96 |
| Solyc02g072100.2.1 | Tomato | cytosol | 64.41 | 66.67 |
| Solyc07g062290.2.1 | Tomato | cytosol | 62.71 | 64.35 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 72.88 | 59.72 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 42.37 | 52.08 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G191600.1 | EnsemblPlantsGene:TraesCS5D01G191600 | Gene3D:1.20.225.20 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 |
| PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5D:-:294424631..294428059
Molecular Weight (calculated)
12724.1 Da
IEP (calculated)
8.209
GRAVY (calculated)
-0.400
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKG AAAAGGEATK KVRKPKPWKH PQPITIAQLR QMRDEFWDTA PHYGGRKEIW DALRAASEAD VALAQAIVES AGVIVSNADL TLCYDERGAK
101: YELPKYVLSA PTNLVQDS
101: YELPKYVLSA PTNLVQDS
001: MGCSSSRTIA EGKKEKIRRP KTWKHPQPIS RDELTQMREE FWDTAPHYGG KKEIWDALRA AAEEDDLSLA QTILESAGVI VQNTDLTICY DEKGSKYELP
101: KYVLRDPSNL IPTK
101: KYVLRDPSNL IPTK
Arabidopsis Description
At1g16960 [Source:UniProtKB/TrEMBL;Acc:Q9FZ55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.