Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G186400.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5D01G191600.1 | Wheat | cytosol | 99.15 | 99.15 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 88.14 | 85.25 |
| Os09t0345000-02 | Rice | cytosol | 81.36 | 82.76 |
| KRH27369 | Soybean | cytosol | 75.42 | 78.07 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 72.03 | 76.58 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 72.03 | 76.58 |
| AT1G53400.1 | Thale cress | cytosol | 73.73 | 76.32 |
| CDY60203 | Canola | cytosol | 73.73 | 76.32 |
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 78.81 | 76.23 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 72.88 | 75.44 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 72.88 | 75.44 |
| EER98775 | Sorghum | cytosol | 77.97 | 75.41 |
| CDY24097 | Canola | cytosol | 72.03 | 74.56 |
| Bra039670.1-P | Field mustard | cytosol | 72.03 | 74.56 |
| Bra038123.1-P | Field mustard | cytosol | 72.03 | 74.56 |
| CDY24099 | Canola | cytosol | 71.19 | 73.68 |
| PGSC0003DMT400073258 | Potato | cytosol | 66.1 | 68.42 |
| PGSC0003DMT400018283 | Potato | cytosol | 66.1 | 67.83 |
| Solyc02g072100.2.1 | Tomato | cytosol | 65.25 | 67.54 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 72.88 | 66.67 |
| Solyc07g062290.2.1 | Tomato | cytosol | 63.56 | 65.22 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 77.12 | 62.33 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 43.22 | 53.12 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G184800.1 | EnsemblPlantsGene:TraesCS5B01G184800 | Gene3D:1.20.225.20 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 |
| PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5B:-:335948345..335951473
Molecular Weight (calculated)
12782.1 Da
IEP (calculated)
7.413
GRAVY (calculated)
-0.445
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKG AAAAGGEATK KVRKPKPWKH PQPITIAQLR QMRDEFWDTA PHYGGRKEIW DALRAASEAD VALAQAIVES AGVIVSNADL TLCYDERGAK
101: YELPKYVLSE PTNLVQDS
101: YELPKYVLSE PTNLVQDS
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.