Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- peroxisome 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 98.2 | 98.2 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 75.68 | 80.0 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 79.28 | 77.19 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 77.48 | 76.11 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 77.48 | 76.11 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 77.48 | 76.11 |
| KXG22390 | Sorghum | cytosol | 76.58 | 75.22 |
| PGSC0003DMT400073258 | Potato | cytosol | 76.58 | 74.56 |
| Zm00001d043565_P001 | Maize | cytosol | 75.68 | 74.34 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 76.58 | 72.65 |
| EES03565 | Sorghum | cytosol | 73.87 | 72.57 |
| PGSC0003DMT400018283 | Potato | cytosol | 74.77 | 72.17 |
| TraesCS5A01G186400.1 | Wheat | cytosol | 76.58 | 72.03 |
| TraesCS5B01G184800.1 | Wheat | cytosol | 76.58 | 72.03 |
| Os09t0345000-02 | Rice | cytosol | 74.77 | 71.55 |
| TraesCS5D01G191600.1 | Wheat | cytosol | 75.68 | 71.19 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 71.17 | 69.91 |
| Os05t0529400-01 | Rice | cytosol | 70.27 | 69.03 |
| Os01t0731000-01 | Rice | plasma membrane | 70.27 | 69.03 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 45.95 | 68.92 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 73.87 | 67.21 |
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 73.87 | 67.21 |
| GSMUA_Achr2P15540_001 | Banana | cytosol | 68.47 | 66.67 |
| EER98775 | Sorghum | cytosol | 72.07 | 65.57 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 72.07 | 62.02 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 77.48 | 58.9 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 72.97 | 56.25 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 72.97 | 56.25 |
| Zm00001d038753_P002 | Maize | cytosol | 62.16 | 46.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400071514 | EnsemblPlantsGene:PGSC0003DMG400027821 | EntrezGene:102583989 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | PGSC:PGSC0003DMG400027821 | RefSeq:XP_006356096.1 | UniParc:UPI000294B2D8 | UniProt:M1CNX5 |
| MapMan:35.2 | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027821]
Coordinates
chr3:-:993653..998767
Molecular Weight (calculated)
12443.7 Da
IEP (calculated)
5.189
GRAVY (calculated)
-0.600
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCSGSKENE AAKQIRKPKP WKHSEPITRA QLVQMRDEFW DTAPHYGGQK EIWDALRAAA ESDISLAQAI VDSAGIIVQA PDLTICYDER GAKYELPKYV
101: LSEPTNLIRD N
101: LSEPTNLIRD N
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.