Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043565_P001 | Maize | cytosol | 55.33 | 73.45 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 55.33 | 73.45 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 55.33 | 73.45 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 54.67 | 72.57 |
| Os05t0529400-01 | Rice | cytosol | 52.67 | 69.91 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 50.67 | 64.96 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 45.33 | 64.76 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 46.0 | 62.16 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 30.67 | 62.16 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 44.67 | 60.36 |
| Bra039670.1-P | Field mustard | cytosol | 45.33 | 59.65 |
| CDY24097 | Canola | cytosol | 45.33 | 59.65 |
| CDY60203 | Canola | cytosol | 44.67 | 58.77 |
| AT1G53400.1 | Thale cress | cytosol | 44.67 | 58.77 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 44.67 | 58.77 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 44.67 | 58.77 |
| KRH27369 | Soybean | cytosol | 44.0 | 57.89 |
| Bra038123.1-P | Field mustard | cytosol | 44.0 | 57.89 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 55.33 | 56.85 |
| PGSC0003DMT400018283 | Potato | cytosol | 43.33 | 56.52 |
| Solyc02g072100.2.1 | Tomato | cytosol | 42.67 | 56.14 |
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 45.33 | 55.74 |
| CDY24099 | Canola | cytosol | 42.0 | 55.26 |
| PGSC0003DMT400073258 | Potato | cytosol | 42.0 | 55.26 |
| Solyc07g062290.2.1 | Tomato | cytosol | 42.0 | 54.78 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 21.33 | 33.33 |
Protein Annotations
| EnsemblPlants:Zm00001d038753_P002 | EnsemblPlants:Zm00001d038753_T002 | EnsemblPlantsGene:Zm00001d038753 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:AQK87730.1 | UniParc:UPI0008427C82 | UniProt:A0A1D6MAB5 | MapMan:35.2 |
Description
Ubiquitin domain-containing protein
Coordinates
chr6:-:163895906..163898198
Molecular Weight (calculated)
16892.2 Da
IEP (calculated)
8.851
GRAVY (calculated)
-0.563
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKV DENSKKLKRP KAWKHTQPIT PARLKQMRDE FWDTAPHYGG QKEIWDALRV AAESDLALAQ TIVDSAGIIV SNPDMTLCYD ERGRRQVRAA
101: QVCLERASEP DPRRVILDPK RFCSSTKQGH VNLCGWLIRS LVLDCNFQGQ
101: QVCLERASEP DPRRVILDPK RFCSSTKQGH VNLCGWLIRS LVLDCNFQGQ
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.