Factsheet for Bra038123.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53400.1	Bra000267.1-P	AT2G42580.1	19000166
AT1G53400.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60203	Canola	cytosol	98.25	98.25
AT1G53400.1	Thale cress	cytosol	93.86	93.86
Bra039670.1-P	Field mustard	cytosol	88.6	88.6
KRH27369	Soybean	cytosol	81.58	81.58
VIT_19s0014g01000.t01	Wine grape	cytosol	78.07	78.07
HORVU3Hr1G069400.1	Barley	cytosol	72.81	73.45
TraesCS1A01G349000.1	Wheat	cytosol	71.93	72.57
TraesCS1D01G352200.1	Wheat	cytosol	71.93	72.57
HORVU1Hr1G081490.1	Barley	cytosol	71.93	72.57
Os09t0345000-02	Rice	cytosol	73.68	72.41
GSMUA_Achr7P24870_001	Banana	cytosol	66.67	72.38
PGSC0003DMT400018283	Potato	cytosol	72.81	72.17
TraesCS5A01G186400.1	Wheat	cytosol	74.56	72.03
TraesCS5B01G184800.1	Wheat	cytosol	74.56	72.03
TraesCS5D01G191600.1	Wheat	cytosol	73.68	71.19
GSMUA_Achr3P31840_001	Banana	cytosol	71.93	70.09
Zm00001d043565_P001	Maize	cytosol	69.3	69.91
Os05t0529400-01	Rice	cytosol	69.3	69.91
KXG22390	Sorghum	cytosol	69.3	69.91
EES03565	Sorghum	cytosol	69.3	69.91
Solyc07g062290.2.1	Tomato	cytosol	70.18	69.57
Bra016622.1-P	Field mustard	cytosol, mitochondrion, nucleus	67.54	67.54
Bra017593.1-P	Field mustard	cytosol	68.42	66.1
HORVU5Hr1G041520.2	Barley	mitochondrion	70.18	65.57
Os01t0731000-01	Rice	plasma membrane	64.91	65.49
TraesCS3B01G315300.2	Wheat	cytosol	72.81	64.34
GSMUA_Achr2P15540_001	Banana	cytosol	63.16	63.16
Zm00001d005631_P001	Maize	mitochondrion, plasma membrane	67.54	63.11
EER98775	Sorghum	cytosol	66.67	62.3
Zm00001d039399_P001	Maize	cytosol, nucleus, plastid	40.35	62.16
TraesCS3D01G281600.2	Wheat	cytosol, endoplasmic reticulum, plastid	73.68	58.33
TraesCS3A01G281600.1	Wheat	cytosol, endoplasmic reticulum, plastid	72.81	57.64
TraesCS1B01G363900.2	Wheat	cytosol	71.93	56.16
Zm00001d038753_P002	Maize	cytosol	57.89	44.0

Protein Annotations

EnsemblPlants:Bra038123.1	EnsemblPlants:Bra038123.1-P	EnsemblPlantsGene:Bra038123	Gene3D:1.20.225.20	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0043130	InterPro:DC-UbP/UBTD2_N	InterPro:DC-UbP/UBTD2_N_sf	InterPro:IPR038169	PANTHER:PTHR13609
PANTHER:PTHR13609:SF13	PFAM:PF16455	UniParc:UPI00025476F1	UniProt:M4FAK9	MapMan:35.2	:

Description

AT1G53400 (E=4e-060) | unknown protein

Coordinates

chrA05:-:10342459..10344348

Molecular Weight (calculated)

12710.0 Da

IEP (calculated)

5.762

GRAVY (calculated)

-0.641

Length

114 amino acids

Sequence
(BLAST)

001: MGCAGSTQSQ GEGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTSPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNNDLTVCY DERGAKYELP
101: KYVLSEPTNM VEDN

Best Arabidopsis Sequence Match ( AT1G53400.1 )
(BLAST)

001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN

Arabidopsis Description

F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.