Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
23353019
mitochondrion: 27297264 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98775 | Sorghum | cytosol | 95.9 | 95.9 |
| Os09t0345000-02 | Rice | cytosol | 77.05 | 81.03 |
| TraesCS5B01G184800.1 | Wheat | cytosol | 76.23 | 78.81 |
| TraesCS5A01G186400.1 | Wheat | cytosol | 76.23 | 78.81 |
| TraesCS5D01G191600.1 | Wheat | cytosol | 75.41 | 77.97 |
| Zm00001d043565_P001 | Maize | cytosol | 70.49 | 76.11 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 67.21 | 73.87 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 66.39 | 72.97 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 72.13 | 72.13 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 65.57 | 70.18 |
| CDY60203 | Canola | cytosol | 64.75 | 69.3 |
| KRH27369 | Soybean | cytosol | 63.93 | 68.42 |
| AT1G53400.1 | Thale cress | cytosol | 63.93 | 68.42 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 63.93 | 68.42 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 40.98 | 67.57 |
| Bra038123.1-P | Field mustard | cytosol | 63.11 | 67.54 |
| Bra039670.1-P | Field mustard | cytosol | 63.11 | 67.54 |
| CDY24097 | Canola | cytosol | 63.11 | 67.54 |
| CDY24099 | Canola | cytosol | 63.11 | 67.54 |
| PGSC0003DMT400073258 | Potato | cytosol | 61.48 | 65.79 |
| Solyc02g072100.2.1 | Tomato | cytosol | 60.66 | 64.91 |
| PGSC0003DMT400018283 | Potato | cytosol | 60.66 | 64.35 |
| Solyc07g062290.2.1 | Tomato | cytosol | 59.02 | 62.61 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 36.89 | 46.88 |
| Zm00001d038753_P002 | Maize | cytosol | 55.74 | 45.33 |
Protein Annotations
| EMBL:EU976227 | EnsemblPlants:Zm00001d005631_P001 | EnsemblPlants:Zm00001d005631_T001 | EnsemblPlantsGene:Zm00001d005631 | EntrezGene:100286222 | Gene3D:1.20.225.20 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf |
| InterPro:IPR038169 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:ONM21573.1 | UniParc:UPI000182F1CA |
| UniProt:B6UG62 | MapMan:35.2 | : | : | : | : |
Description
Dendritic cell-derived ubiquitin-like protein
Coordinates
chr2:-:181237525..181241171
Molecular Weight (calculated)
13469.8 Da
IEP (calculated)
6.943
GRAVY (calculated)
-0.599
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCVGSTPAT KDAGGSSDVN HGTKRVRKPK AWKHPQPITM AQLRQMREEF WDTAPHYGGQ KEIWDALRVA SESEVSHAQA VVESAGIIVS NADLTLCYDE
101: RGAKYELPKY VLSEPTNLIR DS
101: RGAKYELPKY VLSEPTNLIR DS
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.