Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039670.1-P | Field mustard | cytosol | 92.98 | 92.98 |
| CDY24097 | Canola | cytosol | 92.98 | 92.98 |
| CDY60203 | Canola | cytosol | 87.72 | 87.72 |
| AT1G53400.1 | Thale cress | cytosol | 86.84 | 86.84 |
| KRH27369 | Soybean | cytosol | 76.32 | 76.32 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 72.81 | 72.81 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 71.05 | 71.68 |
| Os09t0345000-02 | Rice | cytosol | 72.81 | 71.55 |
| TraesCS5B01G184800.1 | Wheat | cytosol | 73.68 | 71.19 |
| TraesCS5A01G186400.1 | Wheat | cytosol | 73.68 | 71.19 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 64.91 | 70.48 |
| TraesCS5D01G191600.1 | Wheat | cytosol | 72.81 | 70.34 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 69.3 | 69.91 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 69.3 | 69.91 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 69.3 | 69.91 |
| Os05t0529400-01 | Rice | cytosol | 68.42 | 69.03 |
| Zm00001d043565_P001 | Maize | cytosol | 67.54 | 68.14 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 69.3 | 67.52 |
| KXG22390 | Sorghum | cytosol | 66.67 | 67.26 |
| EES03565 | Sorghum | cytosol | 66.67 | 67.26 |
| PGSC0003DMT400018283 | Potato | cytosol | 66.67 | 66.09 |
| CDX83930 | Canola | cytosol, mitochondrion, nucleus | 65.79 | 65.79 |
| CDX96797 | Canola | cytosol, mitochondrion, nucleus | 65.79 | 65.79 |
| GSMUA_Achr2P15540_001 | Banana | cytosol | 64.91 | 64.91 |
| Os01t0731000-01 | Rice | plasma membrane | 64.04 | 64.6 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 68.42 | 63.93 |
| CDY60536 | Canola | cytosol | 65.79 | 63.56 |
| Solyc07g062290.2.1 | Tomato | cytosol | 64.04 | 63.48 |
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 67.54 | 63.11 |
| EER98775 | Sorghum | cytosol | 65.79 | 61.48 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 69.3 | 61.24 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 38.6 | 59.46 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 49.12 | 58.33 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 71.05 | 56.25 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 70.18 | 55.56 |
| CDX81793 | Canola | cytosol | 59.65 | 54.84 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 69.3 | 54.11 |
| CDY23106 | Canola | cytosol | 51.75 | 44.7 |
| Zm00001d038753_P002 | Maize | cytosol | 55.26 | 42.0 |
Protein Annotations
| EnsemblPlants:CDY24099 | EnsemblPlantsGene:GSBRNA2T00024646001 | Gene3D:1.20.225.20 | GO:A0A078GFJ8 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:CDY24099 | ProteinID:CDY24099.1 | UniParc:UPI0004EF38C6 | UniProt:A0A078GFJ8 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA06g00970DBnaA06g00970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFJ8]
Coordinates
chrLK032153:-:457871..459614
Molecular Weight (calculated)
12636.8 Da
IEP (calculated)
4.734
GRAVY (calculated)
-0.511
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTQSQ AEVAVKRIRK PEPWKHTQPI SKAELVKMRE EFWDTAPHYG GTKDLWDALR AAAEADISLA QAIVDSAGVI VQNNDLTTCY DERGAKYELP
101: KYVLSEPTNL VEES
101: KYVLSEPTNL VEES
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.