Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22390 | Sorghum | cytosol | 81.08 | 53.1 |
| Zm00001d043565_P001 | Maize | cytosol | 77.03 | 50.44 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 70.27 | 49.52 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 72.97 | 47.79 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 72.97 | 47.79 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 71.62 | 46.9 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 68.92 | 45.95 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 68.92 | 45.95 |
| Os05t0529400-01 | Rice | cytosol | 68.92 | 45.13 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 70.27 | 44.44 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 66.22 | 42.98 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 64.86 | 42.11 |
| KRH27369 | Soybean | cytosol | 64.86 | 42.11 |
| CDY60203 | Canola | cytosol | 63.51 | 41.23 |
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 67.57 | 40.98 |
| PGSC0003DMT400018283 | Potato | cytosol | 63.51 | 40.87 |
| AT1G53400.1 | Thale cress | cytosol | 62.16 | 40.35 |
| CDY24097 | Canola | cytosol | 62.16 | 40.35 |
| Bra039670.1-P | Field mustard | cytosol | 62.16 | 40.35 |
| Bra038123.1-P | Field mustard | cytosol | 62.16 | 40.35 |
| Solyc07g062290.2.1 | Tomato | cytosol | 62.16 | 40.0 |
| PGSC0003DMT400073258 | Potato | cytosol | 59.46 | 38.6 |
| CDY24099 | Canola | cytosol | 59.46 | 38.6 |
| Solyc02g072100.2.1 | Tomato | cytosol | 58.11 | 37.72 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 72.97 | 36.99 |
| Zm00001d038753_P002 | Maize | cytosol | 62.16 | 30.67 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 35.14 | 27.08 |
Protein Annotations
| EnsemblPlants:Zm00001d039399_P001 | EnsemblPlants:Zm00001d039399_T001 | EnsemblPlantsGene:Zm00001d039399 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:ONM28553.1 | UniParc:UPI000221A8CA | UniProt:A0A1D6MG71 | MapMan:35.2 |
Description
Ubiquitin domain-containing protein
Coordinates
chr3:-:3410500..3411160
Molecular Weight (calculated)
8299.8 Da
IEP (calculated)
4.093
GRAVY (calculated)
-0.336
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MHQCYNESPP RCPEIWDALR VAAESDLALA QTIVDSAGII VSNPDMTLCY DERDSKYELP KYVLSEPANL IRDG
001: MGCIGSSQAR NEGGAKRKKI MKPKPWAHTE PITRAQLTNM REEFWDTSPH YGGQREIWEA LRAAAEADLK LAQTIVDSAG VIVQNRDLTL CWDERGARYE
101: LPRYVLSEPT NLIREEGQ
101: LPRYVLSEPT NLIREEGQ
Arabidopsis Description
Ubiquitin domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KEM2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.