Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | EES01073 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | EES02247 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | OQU78515 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G352200.1 | Wheat | cytosol | 89.38 | 89.38 |
| EES03565 | Sorghum | cytosol | 89.38 | 89.38 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 88.5 | 88.5 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 88.5 | 88.5 |
| Os05t0529400-01 | Rice | cytosol | 85.84 | 85.84 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 77.88 | 83.81 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 85.84 | 82.91 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 53.1 | 81.08 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 75.22 | 76.58 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 73.45 | 74.77 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 74.34 | 73.68 |
| KRH27369 | Soybean | cytosol | 72.57 | 71.93 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 72.57 | 71.93 |
| EER98775 | Sorghum | cytosol | 76.99 | 71.31 |
| CDY60203 | Canola | cytosol | 71.68 | 71.05 |
| AT1G53400.1 | Thale cress | cytosol | 70.8 | 70.18 |
| CDY24097 | Canola | cytosol | 70.8 | 70.18 |
| Bra039670.1-P | Field mustard | cytosol | 70.8 | 70.18 |
| Bra038123.1-P | Field mustard | cytosol | 69.91 | 69.3 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 89.38 | 69.18 |
| PGSC0003DMT400018283 | Potato | cytosol | 69.91 | 68.7 |
| Solyc07g062290.2.1 | Tomato | cytosol | 68.14 | 66.96 |
| CDY24099 | Canola | cytosol | 67.26 | 66.67 |
| Solyc02g072100.2.1 | Tomato | cytosol | 66.37 | 65.79 |
| PGSC0003DMT400073258 | Potato | cytosol | 65.49 | 64.91 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 40.71 | 47.92 |
Protein Annotations
| EnsemblPlants:KXG22390 | EnsemblPlantsGene:SORBI_3009G207300 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 |
| PFAM:PF16455 | ProteinID:KXG22390 | ProteinID:KXG22390.1 | UniParc:UPI0001FCBF34 | UniProt:A0A1B6P9H0 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr9:+:55485372..55488062
Molecular Weight (calculated)
12604.0 Da
IEP (calculated)
6.517
GRAVY (calculated)
-0.608
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKV DENSKKLKKP KAWKHTQPIT PAQLKQMRDE FWDTAPHYGG QKEIWDALRV AAESDLALAQ TIVDSAGIII SNPDMTLCYD ERGAKYELPK
101: YVLSEPTNLI RDG
101: YVLSEPTNLI RDG
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.