Factsheet for VIT_10s0003g01710.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g01000.t01	Wine grape	cytosol	84.21	84.21
GSMUA_Achr7P24870_001	Banana	cytosol	73.68	80.0
TraesCS1D01G352200.1	Wheat	cytosol	78.95	79.65
TraesCS1A01G349000.1	Wheat	cytosol	78.95	79.65
PGSC0003DMT400071514	Potato	cytosol, mitochondrion, nucleus	77.19	79.28
HORVU1Hr1G081490.1	Barley	cytosol	78.07	78.76
GSMUA_Achr3P31840_001	Banana	cytosol	80.7	78.63
Solyc03g006020.2.1	Tomato	cytosol, mitochondrion, nucleus	75.44	77.48
PGSC0003DMT400073258	Potato	cytosol	74.56	74.56
KXG22390	Sorghum	cytosol	73.68	74.34
Zm00001d043565_P001	Maize	cytosol	72.81	73.45
Os05t0529400-01	Rice	cytosol	72.81	73.45
TraesCS5A01G186400.1	Wheat	cytosol	75.44	72.88
TraesCS5B01G184800.1	Wheat	cytosol	75.44	72.88
Solyc02g072100.2.1	Tomato	cytosol	72.81	72.81
HORVU3Hr1G069400.1	Barley	cytosol	71.93	72.57
EES03565	Sorghum	cytosol	71.93	72.57
TraesCS5D01G191600.1	Wheat	cytosol	74.56	72.03
GSMUA_Achr2P15540_001	Banana	cytosol	71.05	71.05
Os01t0731000-01	Rice	plasma membrane	70.18	70.8
HORVU5Hr1G041520.2	Barley	mitochondrion	73.68	68.85
Os09t0345000-02	Rice	cytosol	69.3	68.1
Zm00001d039399_P001	Maize	cytosol, nucleus, plastid	42.98	66.22
Zm00001d005631_P001	Maize	mitochondrion, plasma membrane	70.18	65.57
EER98775	Sorghum	cytosol	69.3	64.75
TraesCS3B01G315300.2	Wheat	cytosol	72.81	64.34
TraesCS1B01G363900.2	Wheat	cytosol	78.95	61.64
TraesCS3A01G281600.1	Wheat	cytosol, endoplasmic reticulum, plastid	74.56	59.03
TraesCS3D01G281600.2	Wheat	cytosol, endoplasmic reticulum, plastid	73.68	58.33
Zm00001d038753_P002	Maize	cytosol	58.77	44.67

Protein Annotations

Gene3D:1.20.225.20	EntrezGene:100247989	wikigene:100247989	MapMan:35.2	ProteinID:CBI30724	ProteinID:CBI30724.3
UniProt:D7TJQ2	InterPro:DC-UbP/UBTD2_N	InterPro:DC-UbP/UBTD2_N_sf	EMBL:FN595992	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0043130	InterPro:IPR038169	EntrezGene:LOC100247989	wikigene:LOC100247989	PFAM:PF16455
PANTHER:PTHR13609	PANTHER:PTHR13609:SF13	UniParc:UPI00015CBAB7	ArrayExpress:VIT_10s0003g01710	EnsemblPlantsGene:VIT_10s0003g01710	EnsemblPlants:VIT_10s0003g01710.t01
RefSeq:XP_002267858	RefSeq:XP_002267858.1	:	:	:	:

Description

No Description!

Coordinates

chr10:+:3139076..3149830

Molecular Weight (calculated)

12785.0 Da

IEP (calculated)

8.209

GRAVY (calculated)

-0.756

Length

114 amino acids

Sequence
(BLAST)

001: MGCTGSSRAK GDESSKKIRR PKPWKHSQAL TRTQLKQMRD EFWDTAPHYG GQKEIWDALR AATEADLTLA QAIVDSAGVI VQSADLTTCY DERGAKYELP
101: KYVLSEPTNL IRDN

Best Arabidopsis Sequence Match ( AT1G53400.1 )
(BLAST)

001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN

Arabidopsis Description

F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.