Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G069400.1 | Barley | cytosol | 81.4 | 92.92 |
| Zm00001d043565_P001 | Maize | cytosol | 75.97 | 86.73 |
| EES03565 | Sorghum | cytosol | 73.64 | 84.07 |
| Os01t0731000-01 | Rice | plasma membrane | 72.09 | 82.3 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 71.32 | 78.63 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 63.57 | 78.1 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 84.5 | 75.69 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 84.5 | 75.69 |
| AT1G53400.1 | Thale cress | cytosol | 65.12 | 73.68 |
| TraesCS5B01G184800.1 | Wheat | cytosol | 66.67 | 72.88 |
| Bra038123.1-P | Field mustard | cytosol | 64.34 | 72.81 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 64.34 | 72.81 |
| CDY60203 | Canola | cytosol | 64.34 | 72.81 |
| CDY24097 | Canola | cytosol | 64.34 | 72.81 |
| Bra039670.1-P | Field mustard | cytosol | 64.34 | 72.81 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 62.02 | 72.07 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 62.02 | 72.07 |
| KRH27369 | Soybean | cytosol | 62.79 | 71.05 |
| CDY24099 | Canola | cytosol | 61.24 | 69.3 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 61.24 | 69.3 |
| PGSC0003DMT400018283 | Potato | cytosol | 61.24 | 68.7 |
| Solyc02g072100.2.1 | Tomato | cytosol | 59.69 | 67.54 |
| Solyc07g062290.2.1 | Tomato | cytosol | 58.91 | 66.09 |
| PGSC0003DMT400073258 | Potato | cytosol | 58.14 | 65.79 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 74.42 | 65.75 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 35.66 | 47.92 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G315300.2 | EnsemblPlantsGene:TraesCS3B01G315300 | Gene3D:1.20.225.20 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 |
| PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | PFAM:PF16455 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3B:+:507130421..507132991
Molecular Weight (calculated)
14434.0 Da
IEP (calculated)
5.672
GRAVY (calculated)
-0.529
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPKS DGLSFHSVYL DSVNAFLDSS KKLKKTKPWK HTQSITPAQL KQMREEFWDT TPHYGGQKEI WDALRAAAEA DLSLAQTIVD SAGIIVSNSD
101: MTLCYDERGA KYELPKYVLS EPTNFIREE
101: MTLCYDERGA KYELPKYVLS EPTNFIREE
001: MGCSSSRTIA EGKKEKIRRP KTWKHPQPIS RDELTQMREE FWDTAPHYGG KKEIWDALRA AAEEDDLSLA QTILESAGVI VQNTDLTICY DEKGSKYELP
101: KYVLRDPSNL IPTK
101: KYVLRDPSNL IPTK
Arabidopsis Description
At1g16960 [Source:UniProtKB/TrEMBL;Acc:Q9FZ55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.