Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- peroxisome 1
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P24870_001 | Banana | cytosol | 79.49 | 88.57 |
| KXG22390 | Sorghum | cytosol | 82.91 | 85.84 |
| Zm00001d043565_P001 | Maize | cytosol | 80.34 | 83.19 |
| EES03565 | Sorghum | cytosol | 80.34 | 83.19 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 79.49 | 82.3 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 78.63 | 81.42 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 78.63 | 81.42 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 78.63 | 80.7 |
| Os05t0529400-01 | Rice | cytosol | 77.78 | 80.53 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 76.92 | 79.65 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 72.65 | 76.58 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 74.36 | 76.32 |
| Os01t0731000-01 | Rice | plasma membrane | 73.5 | 76.11 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 70.94 | 74.77 |
| KRH27369 | Soybean | cytosol | 72.65 | 74.56 |
| CDY60203 | Canola | cytosol | 71.79 | 73.68 |
| Bra038123.1-P | Field mustard | cytosol | 70.09 | 71.93 |
| GSMUA_Achr2P15540_001 | Banana | cytosol | 70.09 | 71.93 |
| AT1G53400.1 | Thale cress | cytosol | 70.09 | 71.93 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 78.63 | 71.32 |
| PGSC0003DMT400018283 | Potato | cytosol | 70.09 | 71.3 |
| CDY24097 | Canola | cytosol | 69.23 | 71.05 |
| Bra039670.1-P | Field mustard | cytosol | 69.23 | 71.05 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 44.44 | 70.27 |
| CDY24099 | Canola | cytosol | 67.52 | 69.3 |
| Solyc07g062290.2.1 | Tomato | cytosol | 67.52 | 68.7 |
| PGSC0003DMT400073258 | Potato | cytosol | 66.67 | 68.42 |
| Solyc02g072100.2.1 | Tomato | cytosol | 66.67 | 68.42 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 80.34 | 65.28 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 79.49 | 64.58 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 79.49 | 63.7 |
| Zm00001d038753_P002 | Maize | cytosol | 64.96 | 50.67 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 41.03 | 50.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P31840_001 | EnsemblPlants:GSMUA_Achr3T31840_001 | EnsemblPlantsGene:GSMUA_Achr3G31840_001 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | SEG:seg | UniParc:UPI00029600B1 | UniProt:M0SJJ8 | MapMan:35.2 |
Description
Putative Ubiquitin domain-containing protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G31840_001]
Coordinates
chr3:+:29975621..29979922
Molecular Weight (calculated)
13090.6 Da
IEP (calculated)
5.744
GRAVY (calculated)
-0.596
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPAK GDVILENTKK LQKPKPWKHT QQMTRAQLKQ MRDEFWDTAP HYGGQKEIWD ALRAAAEADL DLAQAIVDSA GIIIPNADMT LCYDERGAKY
101: ELPKYVLSEP TNLIRDS
101: ELPKYVLSEP TNLIRDS
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.