CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53400.1	KRH22291	AT2G42580.1	19000166
AT1G53400.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g01000.t01	Wine grape	cytosol	88.6	88.6
CDY60203	Canola	cytosol	83.33	83.33
AT1G53400.1	Thale cress	cytosol	83.33	83.33
Bra038123.1-P	Field mustard	cytosol	81.58	81.58
Bra039670.1-P	Field mustard	cytosol	78.95	78.95
CDY24097	Canola	cytosol	78.95	78.95
PGSC0003DMT400018283	Potato	cytosol	77.19	76.52
CDY24099	Canola	cytosol	76.32	76.32
GSMUA_Achr7P24870_001	Banana	cytosol	70.18	76.19
TraesCS5B01G184800.1	Wheat	cytosol	78.07	75.42
TraesCS5A01G186400.1	Wheat	cytosol	78.07	75.42
HORVU1Hr1G081490.1	Barley	cytosol	74.56	75.22
TraesCS1D01G352200.1	Wheat	cytosol	74.56	75.22
TraesCS1A01G349000.1	Wheat	cytosol	74.56	75.22
TraesCS5D01G191600.1	Wheat	cytosol	77.19	74.58
Solyc07g062290.2.1	Tomato	cytosol	74.56	73.91
Zm00001d043565_P001	Maize	cytosol	72.81	73.45
Os09t0345000-02	Rice	cytosol	74.56	73.28
GSMUA_Achr3P31840_001	Banana	cytosol	74.56	72.65
KXG22390	Sorghum	cytosol	71.93	72.57
EES03565	Sorghum	cytosol	71.93	72.57
Os05t0529400-01	Rice	cytosol	71.05	71.68
Os01t0731000-01	Rice	plasma membrane	70.18	70.8
HORVU3Hr1G069400.1	Barley	cytosol	70.18	70.8
HORVU5Hr1G041520.2	Barley	mitochondrion	74.56	69.67
GSMUA_Achr2P15540_001	Banana	cytosol	68.42	68.42
Zm00001d039399_P001	Maize	cytosol, nucleus, plastid	42.11	64.86
EER98775	Sorghum	cytosol	69.3	64.75
Zm00001d005631_P001	Maize	mitochondrion, plasma membrane	68.42	63.93
TraesCS3B01G315300.2	Wheat	cytosol	71.05	62.79
TraesCS1B01G363900.2	Wheat	cytosol	74.56	58.22
TraesCS3A01G281600.1	Wheat	cytosol, endoplasmic reticulum, plastid	72.81	57.64
TraesCS3D01G281600.2	Wheat	cytosol, endoplasmic reticulum, plastid	71.93	56.94
CDY62073	Canola	cytosol, mitochondrion, nucleus	44.74	53.12
Zm00001d038753_P002	Maize	cytosol	57.89	44.0

Protein Annotations

EMBL:ACUP02007802	EnsemblPlants:KRH27369	EnsemblPlantsGene:GLYMA_12G231100	EntrezGene:100812911	Gene3D:1.20.225.20	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0043130	InterPro:DC-UbP/UBTD2_N	InterPro:DC-UbP/UBTD2_N_sf	InterPro:IPR038169
PANTHER:PTHR13609	PANTHER:PTHR13609:SF13	PFAM:PF16455	ProteinID:KRH27369	ProteinID:KRH27369.1	UniParc:UPI000233CBC8
UniProt:I1LV81	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:39099042..39103634

Molecular Weight (calculated)

12655.0 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.562

Length

114 amino acids

Sequence
(BLAST)

001: MGCAGSSQSK PDGAVKKIRK PKPWKHPQPI TKTQLTQLRD EFWDTAPHYG GRKEIWDALR AAAEADLTLA QVIVDSAGVI VQSSDLTVCY DERGAKYELP
101: KYVLSEPTNL IRDS

Best Arabidopsis Sequence Match ( AT1G53400.1 )
(BLAST)

001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN

Arabidopsis Description

F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.