Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | EES01073 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | EES02247 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | OQU78515 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 95.9 | 95.9 |
| Os09t0345000-02 | Rice | cytosol | 76.23 | 80.17 |
| TraesCS5A01G186400.1 | Wheat | cytosol | 75.41 | 77.97 |
| TraesCS5B01G184800.1 | Wheat | cytosol | 75.41 | 77.97 |
| TraesCS5D01G191600.1 | Wheat | cytosol | 74.59 | 77.12 |
| KXG22390 | Sorghum | cytosol | 71.31 | 76.99 |
| EES03565 | Sorghum | cytosol | 67.21 | 72.57 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 65.57 | 72.07 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 71.31 | 71.31 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 64.75 | 71.17 |
| KRH27369 | Soybean | cytosol | 64.75 | 69.3 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 64.75 | 69.3 |
| CDY60203 | Canola | cytosol | 63.93 | 68.42 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 63.11 | 67.54 |
| CDY24097 | Canola | cytosol | 63.11 | 67.54 |
| Bra039670.1-P | Field mustard | cytosol | 63.11 | 67.54 |
| AT1G53400.1 | Thale cress | cytosol | 63.11 | 67.54 |
| Bra038123.1-P | Field mustard | cytosol | 62.3 | 66.67 |
| PGSC0003DMT400073258 | Potato | cytosol | 61.48 | 65.79 |
| CDY24099 | Canola | cytosol | 61.48 | 65.79 |
| Solyc02g072100.2.1 | Tomato | cytosol | 60.66 | 64.91 |
| PGSC0003DMT400018283 | Potato | cytosol | 59.84 | 63.48 |
| Solyc07g062290.2.1 | Tomato | cytosol | 58.2 | 61.74 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 37.7 | 47.92 |
Protein Annotations
| EnsemblPlants:EER98775 | EnsemblPlantsGene:SORBI_3002G176400 | EntrezGene:8055548 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:EER98775 | ProteinID:EER98775.1 | RefSeq:XP_002462254.1 | unigene:Sbi.21346 |
| UniParc:UPI0001A83DE6 | UniProt:C5XAJ3 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:55541433..55544202
Molecular Weight (calculated)
13410.8 Da
IEP (calculated)
7.574
GRAVY (calculated)
-0.572
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCVGSTPAN KDAGGSSDGN HGTKKVRKPK AWKHPQPITM AQLRQMREEF WDTAPHYGGQ KVIWDALRVA SESEVSHAQV VVESAGIIVS NADLTLCYDE
101: RGAKYELPKY VLSEPTNLIR DS
101: RGAKYELPKY VLSEPTNLIR DS
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.