Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0218200-00 | |
| Os05t0210600-01 | |
| Os05t0587300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | Os01t0218200-00 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | Os05t0210600-01 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | Os05t0587300-01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G184800.1 | Wheat | cytosol | 82.76 | 81.36 |
| TraesCS5A01G186400.1 | Wheat | cytosol | 82.76 | 81.36 |
| TraesCS5D01G191600.1 | Wheat | cytosol | 81.9 | 80.51 |
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 81.03 | 77.05 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 73.28 | 76.58 |
| AT1G53400.1 | Thale cress | cytosol | 75.0 | 76.32 |
| EER98775 | Sorghum | cytosol | 80.17 | 76.23 |
| Os05t0529400-01 | Rice | cytosol | 74.14 | 76.11 |
| CDY60203 | Canola | cytosol | 74.14 | 75.44 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 71.55 | 74.77 |
| KRH27369 | Soybean | cytosol | 73.28 | 74.56 |
| Bra038123.1-P | Field mustard | cytosol | 72.41 | 73.68 |
| CDY24097 | Canola | cytosol | 72.41 | 73.68 |
| Bra039670.1-P | Field mustard | cytosol | 72.41 | 73.68 |
| CDY24099 | Canola | cytosol | 71.55 | 72.81 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 75.86 | 72.13 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 68.97 | 70.18 |
| Os01t0731000-01 | Rice | plasma membrane | 68.1 | 69.91 |
| Solyc02g072100.2.1 | Tomato | cytosol | 68.1 | 69.3 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 68.1 | 69.3 |
| PGSC0003DMT400073258 | Potato | cytosol | 67.24 | 68.42 |
| PGSC0003DMT400018283 | Potato | cytosol | 67.24 | 67.83 |
| Solyc07g062290.2.1 | Tomato | cytosol | 65.52 | 66.09 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 42.24 | 51.04 |
Protein Annotations
| EnsemblPlants:Os09t0345000-02 | EnsemblPlantsGene:Os09g0345000 | EntrezGene:4346799 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:BAD29098.1 | ProteinID:BAF24849.1 | ProteinID:BAT07602.1 | ProteinID:EEE69520.1 |
| RefSeq:XP_015651242.1 | UniParc:UPI00003CE8CC | UniProt:Q6EQH2 | MapMan:35.2 | : | : |
Description
Similar to dendritic cell-derived ubiquitin-like protein. (Os09t0345000-01);Similar to dendritic cell-derived ubiquitin-like protein. (Os09t0345000-02)
Coordinates
chr9:-:10770145..10772762
Molecular Weight (calculated)
12906.4 Da
IEP (calculated)
5.752
GRAVY (calculated)
-0.462
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTPMG APESDATKKI RKPKPWKHPQ PITMVQLTKM REEFWDTAPH YGGRKEIWDA LRVAAESEVS LAQAIVESAA IIVSNTDLTL CYDERGAKYE
101: LPKYVLSEPT NLIQDS
101: LPKYVLSEPT NLIQDS
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.