Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53400.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT1G53400.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038123.1-P | Field mustard | cytosol | 98.25 | 98.25 |
| AT1G53400.1 | Thale cress | cytosol | 95.61 | 95.61 |
| CDY24097 | Canola | cytosol | 90.35 | 90.35 |
| CDY24099 | Canola | cytosol | 87.72 | 87.72 |
| KRH27369 | Soybean | cytosol | 83.33 | 83.33 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 79.82 | 79.82 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 73.68 | 74.34 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 73.68 | 74.34 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 73.68 | 74.34 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 73.68 | 74.34 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 68.42 | 74.29 |
| Os09t0345000-02 | Rice | cytosol | 75.44 | 74.14 |
| TraesCS5B01G184800.1 | Wheat | cytosol | 76.32 | 73.73 |
| TraesCS5A01G186400.1 | Wheat | cytosol | 76.32 | 73.73 |
| TraesCS5D01G191600.1 | Wheat | cytosol | 75.44 | 72.88 |
| PGSC0003DMT400018283 | Potato | cytosol | 72.81 | 72.17 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 73.68 | 71.79 |
| Os05t0529400-01 | Rice | cytosol | 71.05 | 71.68 |
| Zm00001d043565_P001 | Maize | cytosol | 71.05 | 71.68 |
| EES03565 | Sorghum | cytosol | 71.05 | 71.68 |
| KXG22390 | Sorghum | cytosol | 71.05 | 71.68 |
| Solyc07g062290.2.1 | Tomato | cytosol | 70.18 | 69.57 |
| CDX83930 | Canola | cytosol, mitochondrion, nucleus | 68.42 | 68.42 |
| CDX96797 | Canola | cytosol, mitochondrion, nucleus | 68.42 | 68.42 |
| Os01t0731000-01 | Rice | plasma membrane | 66.67 | 67.26 |
| HORVU5Hr1G041520.2 | Barley | mitochondrion | 71.93 | 67.21 |
| CDY60536 | Canola | cytosol | 68.42 | 66.1 |
| GSMUA_Achr2P15540_001 | Banana | cytosol | 64.91 | 64.91 |
| Zm00001d005631_P001 | Maize | mitochondrion, plasma membrane | 69.3 | 64.75 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 72.81 | 64.34 |
| EER98775 | Sorghum | cytosol | 68.42 | 63.93 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 41.23 | 63.51 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 50.0 | 59.38 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 74.56 | 59.03 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 73.68 | 58.33 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 73.68 | 57.53 |
| CDX81793 | Canola | cytosol | 62.28 | 57.26 |
| CDY23106 | Canola | cytosol | 52.63 | 45.45 |
| Zm00001d038753_P002 | Maize | cytosol | 58.77 | 44.67 |
Protein Annotations
| EnsemblPlants:CDY60203 | EnsemblPlantsGene:GSBRNA2T00028290001 | Gene3D:1.20.225.20 | GO:A0A078J6P3 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | ProteinID:CDY60203 | ProteinID:CDY60203.1 | UniParc:UPI0004EC93CE | UniProt:A0A078J6P3 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaCnng35820DBnaCnng35820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6P3]
Coordinates
chrLK033854:+:784..2997
Molecular Weight (calculated)
12676.0 Da
IEP (calculated)
5.762
GRAVY (calculated)
-0.602
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAGSTQSQ GEGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNNDLTVCY DERGAKYELP
101: KYVLSEPTNL VEDN
101: KYVLSEPTNL VEDN
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.