Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G231300.1 | Wheat | cytosol, mitochondrion | 95.93 | 95.93 |
| TraesCS3B01G251600.1 | Wheat | cytosol, mitochondrion | 95.93 | 95.93 |
| TraesCS3A01G221800.1 | Wheat | cytosol | 95.49 | 95.49 |
| EES01073 | Sorghum | cytosol | 81.25 | 82.09 |
| Zm00001d044479_P001 | Maize | cytosol | 80.81 | 81.64 |
| Zm00001d011352_P001 | Maize | cytosol | 78.92 | 79.74 |
| HORVU1Hr1G093390.2 | Barley | cytosol | 71.51 | 73.11 |
| GSMUA_Achr7P24480_001 | Banana | cytosol | 55.67 | 59.01 |
| VIT_18s0001g09830.t01 | Wine grape | cytosol | 22.53 | 58.71 |
| GSMUA_Achr4P08560_001 | Banana | cytosol | 57.56 | 57.81 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 40.84 | 55.86 |
| GSMUA_Achr3P25160_001 | Banana | cytosol | 55.23 | 53.37 |
| VIT_19s0014g01470.t01 | Wine grape | cytosol | 53.34 | 52.96 |
| HORVU3Hr1G027650.2 | Barley | mitochondrion | 50.87 | 52.55 |
| KRH26223 | Soybean | nucleus | 51.02 | 51.92 |
| KRH21985 | Soybean | cytosol | 52.03 | 51.73 |
| KRH55099 | Soybean | nucleus | 50.87 | 51.62 |
| VIT_12s0028g02240.t01 | Wine grape | cytosol | 52.76 | 51.13 |
| KRH27330 | Soybean | cytosol | 51.74 | 51.0 |
| KRH22291 | Soybean | plastid | 43.02 | 50.68 |
| PGSC0003DMT400032362 | Potato | cytosol | 51.45 | 50.57 |
| Solyc07g062580.2.1 | Tomato | cytosol | 51.45 | 50.5 |
| CDY25722 | Canola | cytosol, plastid | 48.84 | 50.37 |
| CDY25865 | Canola | cytosol | 47.97 | 50.15 |
| Bra038116.1-P | Field mustard | cytosol | 47.97 | 50.15 |
| CDY02514 | Canola | cytosol, plastid | 48.69 | 50.0 |
| Bra030946.1-P | Field mustard | cytosol, plastid | 48.69 | 50.0 |
| CDY45930 | Canola | cytosol | 47.53 | 49.62 |
| PGSC0003DMT400054803 | Potato | cytosol | 20.78 | 48.64 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.9 | 48.51 |
| AT1G53300.1 | Thale cress | cytosol | 47.97 | 47.21 |
| Bra000267.1-P | Field mustard | cytosol | 46.08 | 47.17 |
| CDY61202 | Canola | cytosol | 45.93 | 47.09 |
| CDY34224 | Canola | cytosol | 4.65 | 46.38 |
| CDY55390 | Canola | cytosol | 45.06 | 46.34 |
| CDY42827 | Canola | cytosol | 44.91 | 46.05 |
| AT3G58620.1 | Thale cress | cytosol | 45.64 | 46.04 |
| CDY51514 | Canola | cytosol | 44.77 | 46.04 |
| AT2G42580.1 | Thale cress | cytosol | 45.93 | 45.73 |
| Bra007405.1-P | Field mustard | cytosol | 44.62 | 45.62 |
| Bra004709.1-P | Field mustard | cytosol | 43.46 | 45.51 |
| PGSC0003DMT400054902 | Potato | cytosol | 19.77 | 45.48 |
| CDX71941 | Canola | cytosol | 44.33 | 45.25 |
| CDY49237 | Canola | cytosol | 43.75 | 45.13 |
| KRH27037 | Soybean | nucleus | 42.73 | 43.56 |
| Bra023795.1-P | Field mustard | cytosol | 5.52 | 43.18 |
| PGSC0003DMT400054904 | Potato | cytosol | 37.35 | 42.55 |
| PGSC0003DMT400054911 | Potato | cytosol | 31.69 | 41.84 |
| Solyc10g007240.1.1 | Tomato | cytosol | 36.05 | 41.75 |
| Solyc10g007230.1.1 | Tomato | cytosol | 35.9 | 41.44 |
| AT3G14950.1 | Thale cress | cytosol | 43.75 | 41.23 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 36.63 | 40.98 |
| HORVU4Hr1G024490.1 | Barley | cytosol | 18.75 | 40.31 |
| Solyc10g007220.1.1 | Tomato | cytosol | 29.36 | 40.0 |
| PGSC0003DMT400054909 | Potato | cytosol | 23.4 | 39.08 |
| Solyc10g007420.2.1 | Tomato | cytosol | 24.13 | 39.06 |
| Bra027292.1-P | Field mustard | cytosol | 41.42 | 38.83 |
| CDX98517 | Canola | cytosol | 40.7 | 38.67 |
| CDX97619 | Canola | cytosol | 40.55 | 38.48 |
| CDY32327 | Canola | cytosol | 40.55 | 38.27 |
| CDY20095 | Canola | nucleus | 40.12 | 37.91 |
| CDY40820 | Canola | mitochondrion | 15.41 | 37.72 |
| CDY34222 | Canola | cytosol | 16.86 | 37.66 |
| Solyc10g007250.1.1 | Tomato | cytosol | 15.26 | 37.63 |
| Bra021583.1-P | Field mustard | nucleus | 40.84 | 37.17 |
| Solyc10g007430.1.1 | Tomato | cytosol, plastid | 19.91 | 36.24 |
| PGSC0003DMT400091014 | Potato | nucleus | 30.52 | 34.6 |
| CDY34223 | Canola | cytosol | 16.13 | 34.05 |
| Bra023793.1-P | Field mustard | cytosol | 20.2 | 33.74 |
| Bra023794.1-P | Field mustard | cytosol, nucleus, plastid | 15.7 | 33.13 |
| HORVU6Hr1G074660.5 | Barley | plastid | 27.18 | 29.97 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:11.3.2.5 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 |
| EnsemblPlantsGene:HORVU3Hr1G054240 | EnsemblPlants:HORVU3Hr1G054240.2 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR013766 | InterPro:IPR019734 |
| UniProt:M0WPC0 | PFAM:PF00085 | PFAM:PF00515 | PFAM:PF07719 | PFAM:PF13432 | PFscan:PS50005 |
| PFscan:PS50293 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF395 | SMART:SM00028 | SUPFAM:SSF48452 | SUPFAM:SSF52833 |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_2 | InterPro:TPR_repeat | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_domain | UniParc:UPI000296F18F | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:401545149..401549684
Molecular Weight (calculated)
73347.3 Da
IEP (calculated)
8.873
GRAVY (calculated)
-0.256
Length
688 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEADRLRLR AAALALDGGA VRDKPDSKAN VFADLGSPVS PLRARASMTT SSSSSSGSAK SPAQSNVGAA GVAGGRSYSG ELAVESQPPR LSGHRRCGSG
101: PLIFSGGSSS GGSGESGGDR GSTASSPMTN ALPAGNICPS GRVPGAASAP PPPRSRPDVL GSGTGHYGHG SIMRGAGMAP ARSSIDAPSF LGHSVRSPAS
201: SPVAPPSGGS LHEMSRLGNE WYKKGRHAEA LRYYDRAVSL CPESAVCRGN RAAALIGLGR LADALRDSEE AVRLDPASGR AHSRLAGLYL RLGMIEKARM
301: HFTQARHLHE SDPADWEKLQ DVEMHLGRST AARKIGDCKS ALREADAAIA AGADSSQLLR ALRSEALLRL HKLEEADSTL TSLLKLDKSL LSLTAAKLSG
401: MLVESYVHIV RAQVDMALGR FDAAVGAAEN ARLIDPGNAE VGMILNNVRL VARARAQGNE LFKAAKFSDA SIAYGEGLKY DPSNPVLHCN RAACWWKLER
501: WEKAIDDCND ALRIQPTYTK ALLRRAMSYS KLERWADCVR DYEVLRKELP ADTEVAEALF HAQVALKTTR GEDVSNMKFG GEVEMVTSVE QLYAATSSPG
601: VSVVYFMSAM NQQCIQITPA LDSLCSECPS MNFLKVNVED SPMVAKAENV RIVPTFKIYK DGARVKEMIC PTLHVLRYTV RHYAVSSS
101: PLIFSGGSSS GGSGESGGDR GSTASSPMTN ALPAGNICPS GRVPGAASAP PPPRSRPDVL GSGTGHYGHG SIMRGAGMAP ARSSIDAPSF LGHSVRSPAS
201: SPVAPPSGGS LHEMSRLGNE WYKKGRHAEA LRYYDRAVSL CPESAVCRGN RAAALIGLGR LADALRDSEE AVRLDPASGR AHSRLAGLYL RLGMIEKARM
301: HFTQARHLHE SDPADWEKLQ DVEMHLGRST AARKIGDCKS ALREADAAIA AGADSSQLLR ALRSEALLRL HKLEEADSTL TSLLKLDKSL LSLTAAKLSG
401: MLVESYVHIV RAQVDMALGR FDAAVGAAEN ARLIDPGNAE VGMILNNVRL VARARAQGNE LFKAAKFSDA SIAYGEGLKY DPSNPVLHCN RAACWWKLER
501: WEKAIDDCND ALRIQPTYTK ALLRRAMSYS KLERWADCVR DYEVLRKELP ADTEVAEALF HAQVALKTTR GEDVSNMKFG GEVEMVTSVE QLYAATSSPG
601: VSVVYFMSAM NQQCIQITPA LDSLCSECPS MNFLKVNVED SPMVAKAENV RIVPTFKIYK DGARVKEMIC PTLHVLRYTV RHYAVSSS
001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
Arabidopsis Description
TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.