Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74050.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT1G74050.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT1G74050.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 92.44 | 88.71 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 90.34 | 86.69 |
| Os02t0591700-01 | Rice | nucleus | 78.99 | 85.84 |
| EES07070 | Sorghum | mitochondrion | 76.05 | 82.65 |
| Zm00001d050921_P002 | Maize | plastid | 74.79 | 81.28 |
| Zm00001d050920_P002 | Maize | plastid | 74.79 | 81.28 |
| Zm00001d017047_P001 | Maize | plastid | 74.37 | 80.82 |
| HORVU6Hr1G052600.3 | Barley | plastid | 81.51 | 74.33 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 61.34 | 70.53 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 60.08 | 69.08 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 65.13 | 66.24 |
| CDY11078 | Canola | cytosol | 54.2 | 62.62 |
| KRH13901 | Soybean | nucleus | 60.08 | 61.64 |
| KRH43467 | Soybean | nucleus | 59.66 | 61.21 |
| Solyc11g012110.1.1 | Tomato | nucleus | 58.4 | 60.7 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 59.24 | 60.52 |
| KRH43314 | Soybean | nucleus | 58.82 | 60.34 |
| PGSC0003DMT400034524 | Potato | cytosol | 57.98 | 60.26 |
| Solyc04g014720.2.1 | Tomato | nucleus | 57.56 | 59.83 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 57.98 | 59.74 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 57.98 | 59.48 |
| PGSC0003DMT400060697 | Potato | cytosol | 57.14 | 59.39 |
| AT1G74050.1 | Thale cress | cytosol | 57.98 | 59.23 |
| Solyc05g054070.2.1 | Tomato | nucleus | 56.72 | 58.95 |
| AT1G18540.1 | Thale cress | cytosol | 57.56 | 58.8 |
| AT1G74060.1 | Thale cress | cytosol | 57.56 | 58.8 |
| Bra015940.1-P | Field mustard | cytosol | 57.14 | 58.37 |
| CDX81879 | Canola | extracellular | 57.14 | 58.12 |
| CDX96716 | Canola | cytosol | 57.14 | 58.12 |
| CDY26150 | Canola | cytosol | 57.14 | 58.12 |
| CDX96510 | Canola | cytosol | 56.72 | 57.94 |
| CDY66361 | Canola | cytosol | 56.72 | 57.94 |
| Bra008128.1-P | Field mustard | cytosol | 56.72 | 57.94 |
| CDY45859 | Canola | cytosol | 56.3 | 57.76 |
| CDY21701 | Canola | cytosol | 56.72 | 57.69 |
| CDY19222 | Canola | cytosol | 56.72 | 57.69 |
| Bra031034.1-P | Field mustard | cytosol | 56.72 | 57.69 |
| PGSC0003DMT400021753 | Potato | cytosol | 55.46 | 57.64 |
| Bra025895.1-P | Field mustard | cytosol | 56.3 | 57.27 |
| CDX83840 | Canola | cytosol | 56.3 | 57.27 |
| KRH59450 | Soybean | endoplasmic reticulum | 57.98 | 57.02 |
| Bra016555.1-P | Field mustard | cytosol | 55.88 | 56.84 |
| CDX73042 | Canola | cytosol | 55.04 | 56.22 |
| Zm00001d025591_P001 | Maize | cytosol | 43.28 | 45.58 |
| Zm00001d041756_P001 | Maize | plastid | 44.12 | 24.88 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | UniProt:A0A287U1D7 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU6Hr1G041750 | EnsemblPlants:HORVU6Hr1G041750.1 | InterPro:IPR014722 | PFAM:PF01159 | PANTHER:PTHR10715 | PANTHER:PTHR10715:SF3 |
| InterPro:Rib_L2_dom2 | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000B4711C3 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr6H:+:230689821..230691581
Molecular Weight (calculated)
26888.8 Da
IEP (calculated)
10.775
GRAVY (calculated)
-0.475
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTSKMALG IKRTSRSRTY HRRGLWAIKA KHGGAFPKAE KPAAVAEPKF YPADDVKPRT FSTRKPHPTK LRSTITPGTV LILLAGRYMG KRVVFLKQLK
101: SGLLLITGPF KINGVPIRRV NQAYVISTST RLDISKVNMQ KFDDKYFARE KKTRAKKSEG ELFESEKDAL YLSCSNTLFY LFSANLQATK NLPDFKKDDQ
201: KVIDTELIKA IDAVPDLKSY LGARFSLRDG DKPHEMTF
101: SGLLLITGPF KINGVPIRRV NQAYVISTST RLDISKVNMQ KFDDKYFARE KKTRAKKSEG ELFESEKDAL YLSCSNTLFY LFSANLQATK NLPDFKKDDQ
201: KVIDTELIKA IDAVPDLKSY LGARFSLRDG DKPHEMTF
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.