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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • cytosol 2
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY19222 Canola cytosol 98.72 98.72
Bra025895.1-P Field mustard cytosol 98.29 98.29
CDX83840 Canola cytosol 97.01 97.01
CDX81879 Canola extracellular 95.73 95.73
CDX96716 Canola cytosol 95.73 95.73
CDY21701 Canola cytosol 95.73 95.73
CDX96510 Canola cytosol 91.45 91.85
AT1G18540.1 Thale cress cytosol 91.45 91.85
CDY66361 Canola cytosol 90.17 90.56
CDY11078 Canola cytosol 79.06 89.81
CDY45859 Canola cytosol 88.46 89.22
CDX73042 Canola cytosol 87.61 87.98
VIT_13s0064g01390.t01 Wine grape cytosol 82.05 82.4
KRH43315 Soybean endoplasmic reticulum, nucleus 79.06 80.09
KRH43467 Soybean nucleus 78.63 79.31
KRH13901 Soybean nucleus 78.21 78.88
KRH43314 Soybean nucleus 78.21 78.88
PGSC0003DMT400034524 Potato cytosol 76.92 78.6
KRH59448 Soybean endoplasmic reticulum, nucleus 77.78 78.45
Solyc11g012110.1.1 Tomato nucleus 76.07 77.73
Solyc04g014720.2.1 Tomato nucleus 76.07 77.73
GSMUA_Achr3P28460_001 Banana cytosol 68.38 77.29
PGSC0003DMT400060697 Potato cytosol 75.64 77.29
KRH59450 Soybean endoplasmic reticulum 79.49 76.86
GSMUA_Achr9P22280_001 Banana cytosol 67.95 76.81
Solyc05g054070.2.1 Tomato nucleus 74.79 76.42
PGSC0003DMT400021753 Potato cytosol 73.93 75.55
Zm00001d049263_P001 Maize cytosol 22.22 75.36
GSMUA_Achr4P06390_001 Banana mitochondrion 72.22 72.22
EES12351 Sorghum mitochondrion 64.53 68.95
Zm00001d050920_P002 Maize plastid 64.53 68.95
EES07070 Sorghum mitochondrion 64.53 68.95
Os04t0473400-01 Rice nucleus, plastid 65.38 68.92
Zm00001d050921_P002 Maize plastid 64.1 68.49
Zm00001d017047_P001 Maize plastid 64.1 68.49
TraesCS6D01G190100.1 Wheat nucleus 61.54 65.75
TraesCS6A01G204900.1 Wheat mitochondrion 61.54 65.75
TraesCS6B01G225600.1 Wheat mitochondrion 61.11 65.3
Os02t0591700-01 Rice nucleus 61.11 65.3
HORVU6Hr1G041750.1 Barley mitochondrion 58.12 57.14
TraesCS6D01G180100.1 Wheat mitochondrion 59.83 56.45
HORVU6Hr1G052600.3 Barley plastid 62.39 55.94
TraesCS6B01G230300.2 Wheat mitochondrion 58.55 55.24
Zm00001d025591_P001 Maize cytosol 42.31 43.81
Zm00001d041756_P001 Maize plastid 42.73 23.7
Protein Annotations
MapMan:17.1.2.1.4Gene3D:2.30.30.30InterPro:60S_ribosomal_L6EGO:A0A078GI73UniProt:A0A078GI73EnsemblPlants:CDY26150
ProteinID:CDY26150ProteinID:CDY26150.1GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005840GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00034803001InterPro:IPR014722
PFAM:PF01159PFAM:PF03868PANTHER:PTHR10715InterPro:Rib_L2_dom2InterPro:Ribosomal_L6_NSUPFAM:SSF50104
InterPro:Translation_prot_SH3-like_sfUniParc:UPI0004EE70C0SEG:seg:::
Description
BnaA06g12670DBnaA06g12670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI73]
Coordinates
chrLK032186:+:4236..5492
Molecular Weight (calculated)
26099.1 Da
IEP (calculated)
10.853
GRAVY (calculated)
-0.541
Length
234 amino acids
Sequence
(BLAST)
001: MPAAKQRTPK VSRNPDLIRG VGKYSRSQMY HKRGLWAIKA KNGGVFPRHD AKSKVEAPVE KPPKFYPAED VKKPLANRRK PKPTKLKASI TPGTVLIILA
101: GRFKGKRVVF LKQLASGLLL VTGPFKINGV PLRRVNQSYV IGTSTKVDIS GVSIEKFDDK YFGKVAEKKT KKGEGEFFEA DKEVKKEIPQ EKKEDQKTVD
201: AALIKAIEAV PELKTYLGAR FSLSQGMKPH ELVF
Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.