Factsheet for Os04t0473400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0218200-00
Os05t0210600-01
Os05t0587300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74050.1	Os01t0218200-00	AT2G42580.1	19000166
AT1G74050.1	Os05t0210600-01	AT2G42580.1	19000166
AT1G74050.1	Os05t0587300-01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12351	Sorghum	mitochondrion	90.09	91.32
Os02t0591700-01	Rice	nucleus	89.19	90.41
Zm00001d049263_P001	Maize	cytosol	26.13	84.06
GSMUA_Achr9P22280_001	Banana	cytosol	70.72	75.85
GSMUA_Achr3P28460_001	Banana	cytosol	69.37	74.4
GSMUA_Achr4P06390_001	Banana	mitochondrion	73.87	70.09
CDY11078	Canola	cytosol	63.51	68.45
VIT_13s0064g01390.t01	Wine grape	cytosol	70.27	66.95
PGSC0003DMT400034524	Potato	cytosol	68.92	66.81
KRH13901	Soybean	nucleus	69.37	66.38
Solyc11g012110.1.1	Tomato	nucleus	68.47	66.38
CDX96716	Canola	cytosol	69.82	66.24
AT1G74050.1	Thale cress	cytosol	68.92	65.67
KRH43467	Soybean	nucleus	68.47	65.52
Solyc04g014720.2.1	Tomato	nucleus	67.57	65.5
CDX81879	Canola	extracellular	68.92	65.38
Bra031034.1-P	Field mustard	cytosol	68.92	65.38
CDY26150	Canola	cytosol	68.92	65.38
KRH43315	Soybean	endoplasmic reticulum, nucleus	68.02	65.37
AT1G18540.1	Thale cress	cytosol	68.47	65.24
AT1G74060.1	Thale cress	cytosol	68.47	65.24
Bra015940.1-P	Field mustard	cytosol	68.47	65.24
PGSC0003DMT400060697	Potato	cytosol	67.12	65.07
CDY21701	Canola	cytosol	68.47	64.96
CDY19222	Canola	cytosol	68.47	64.96
CDY66361	Canola	cytosol	68.02	64.81
CDX96510	Canola	cytosol	68.02	64.81
CDY45859	Canola	cytosol	67.57	64.66
Solyc05g054070.2.1	Tomato	nucleus	66.67	64.63
PGSC0003DMT400021753	Potato	cytosol	66.67	64.63
Bra016555.1-P	Field mustard	cytosol	68.02	64.53
Bra025895.1-P	Field mustard	cytosol	68.02	64.53
Bra008128.1-P	Field mustard	cytosol	67.57	64.38
KRH43314	Soybean	nucleus	67.12	64.22
CDX83840	Canola	cytosol	67.57	64.1
KRH59448	Soybean	endoplasmic reticulum, nucleus	66.67	63.79
CDX73042	Canola	cytosol	65.32	62.23
KRH59450	Soybean	endoplasmic reticulum	67.57	61.98

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	EntrezGene:4336140	InterPro:60S_ribosomal_L6E	EMBL:AK067896	ProteinID:BAF14979.2
ProteinID:BAS89666.1	ProteinID:CAE02874.2	GO:GO:0000027	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625
InterPro:IPR014722	EnsemblPlantsGene:Os04g0473400	EnsemblPlants:Os04t0473400-01	PFAM:PF01159	ScanProsite:PS01170	PANTHER:PTHR10715
PANTHER:PTHR10715:SF3	UniProt:Q7XR19	InterPro:Rib_L2_dom2	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000021C61D
RefSeq:XP_015636866.1	SEG:seg	:	:	:	:

Description

Similar to 60S ribosomal protein L6-B (L17) (YL16) (RP18). (Os04t0473400-01)

Coordinates

chr4:-:23660835..23663001

Molecular Weight (calculated)

24630.0 Da

IEP (calculated)

10.804

GRAVY (calculated)

-0.532

Length

222 amino acids

Sequence
(BLAST)

001: MAPTSKLSQG IKKASRSHTY HRRGLWAIKA KHGGAFPKAE KPAAAAAAAA PKFYPADDVK PRQPSTRKPN PTKLRSSITP GTVLILLAGR FMGKRVVFLK
101: QLKSGLLLVT GPFKINGVPI RRVNQPYVIA TSTKVDISGV NVEKFDDKYF SRDKKQKAKK TEGELFETEK EATKNLPEFK KEDQKVVDAE LIKAIEAVPD
201: LKTYLGARFS LRDGDKPHEM VF

Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)

001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF

Arabidopsis Description

RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.