Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G74060.1 | Thale cress | cytosol | 98.71 | 98.71 |
| CDX96510 | Canola | cytosol | 93.13 | 93.13 |
| Bra015940.1-P | Field mustard | cytosol | 92.7 | 92.7 |
| CDY66361 | Canola | cytosol | 91.42 | 91.42 |
| AT1G18540.1 | Thale cress | cytosol | 91.42 | 91.42 |
| Bra008128.1-P | Field mustard | cytosol | 90.99 | 90.99 |
| CDY45859 | Canola | cytosol | 89.7 | 90.09 |
| CDX73042 | Canola | cytosol | 88.84 | 88.84 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 82.83 | 82.83 |
| PGSC0003DMT400034524 | Potato | cytosol | 78.11 | 79.48 |
| KRH43314 | Soybean | nucleus | 78.97 | 79.31 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 78.97 | 79.31 |
| Solyc11g012110.1.1 | Tomato | nucleus | 77.68 | 79.04 |
| KRH13901 | Soybean | nucleus | 78.54 | 78.88 |
| KRH43467 | Soybean | nucleus | 78.54 | 78.88 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 78.11 | 78.79 |
| Solyc04g014720.2.1 | Tomato | nucleus | 76.82 | 78.17 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 69.1 | 77.78 |
| PGSC0003DMT400060697 | Potato | cytosol | 76.39 | 77.73 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 68.67 | 77.29 |
| Zm00001d049263_P001 | Maize | cytosol | 22.75 | 76.81 |
| KRH59450 | Soybean | endoplasmic reticulum | 79.4 | 76.45 |
| PGSC0003DMT400021753 | Potato | cytosol | 74.68 | 75.98 |
| Solyc05g054070.2.1 | Tomato | nucleus | 74.68 | 75.98 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 74.68 | 74.36 |
| Zm00001d050920_P002 | Maize | plastid | 66.52 | 70.78 |
| EES07070 | Sorghum | mitochondrion | 66.52 | 70.78 |
| Zm00001d050921_P002 | Maize | plastid | 66.09 | 70.32 |
| Zm00001d017047_P001 | Maize | plastid | 66.09 | 70.32 |
| EES12351 | Sorghum | mitochondrion | 66.09 | 70.32 |
| Os02t0591700-01 | Rice | nucleus | 64.81 | 68.95 |
| Os04t0473400-01 | Rice | nucleus, plastid | 65.67 | 68.92 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 62.66 | 66.67 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 62.66 | 66.67 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 62.66 | 66.67 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 59.23 | 57.98 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 60.52 | 56.85 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 60.52 | 56.85 |
| HORVU6Hr1G052600.3 | Barley | plastid | 63.09 | 56.32 |
| Zm00001d025591_P001 | Maize | cytosol | 44.21 | 45.58 |
| Zm00001d041756_P001 | Maize | plastid | 43.78 | 24.17 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | EntrezGene:843744 | UniProt:A0A178W8L4 | ProteinID:AAG52527.1 |
| ProteinID:AEE35542.1 | ArrayExpress:AT1G74050 | EnsemblPlantsGene:AT1G74050 | RefSeq:AT1G74050 | TAIR:AT1G74050 | RefSeq:AT1G74050-TAIR-G |
| EnsemblPlants:AT1G74050.1 | TAIR:AT1G74050.1 | EMBL:AY054573 | EMBL:AY081305 | EMBL:AY087325 | EMBL:AY114641 |
| GO:GO:0000027 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0022625 | GO:GO:0030529 | InterPro:IPR014722 | RefSeq:NP_177545.1 | ProteinID:OAP13733.1 | PFAM:PF01159 |
| PFAM:PF03868 | PO:PO:0000293 | PO:PO:0009025 | PANTHER:PTHR10715 | UniProt:Q9C9C5 | InterPro:Rib_L2_dom2 |
| InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000009E926 | SEG:seg | : |
Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
Coordinates
chr1:-:27847038..27849008
Molecular Weight (calculated)
26108.2 Da
IEP (calculated)
10.894
GRAVY (calculated)
-0.561
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.