Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81879 | Canola | extracellular | 92.7 | 92.31 |
| Bra031034.1-P | Field mustard | cytosol | 92.27 | 91.88 |
| CDX83840 | Canola | cytosol | 92.27 | 91.88 |
| CDY26150 | Canola | cytosol | 91.85 | 91.45 |
| Bra025895.1-P | Field mustard | cytosol | 91.85 | 91.45 |
| CDY21701 | Canola | cytosol | 91.85 | 91.45 |
| CDY19222 | Canola | cytosol | 91.85 | 91.45 |
| AT1G74050.1 | Thale cress | cytosol | 91.42 | 91.42 |
| AT1G74060.1 | Thale cress | cytosol | 90.56 | 90.56 |
| CDX96716 | Canola | cytosol | 90.56 | 90.17 |
| Bra016555.1-P | Field mustard | cytosol | 90.56 | 90.17 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 81.55 | 81.55 |
| KRH43314 | Soybean | nucleus | 78.97 | 79.31 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 78.54 | 79.22 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 78.54 | 78.88 |
| KRH43467 | Soybean | nucleus | 78.54 | 78.88 |
| KRH13901 | Soybean | nucleus | 78.54 | 78.88 |
| PGSC0003DMT400034524 | Potato | cytosol | 76.39 | 77.73 |
| Solyc04g014720.2.1 | Tomato | nucleus | 76.39 | 77.73 |
| Solyc11g012110.1.1 | Tomato | nucleus | 76.39 | 77.73 |
| PGSC0003DMT400060697 | Potato | cytosol | 75.97 | 77.29 |
| Solyc05g054070.2.1 | Tomato | nucleus | 75.11 | 76.42 |
| KRH59450 | Soybean | endoplasmic reticulum | 78.97 | 76.03 |
| PGSC0003DMT400021753 | Potato | cytosol | 74.68 | 75.98 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 67.38 | 75.85 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 67.38 | 75.85 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 72.96 | 72.65 |
| Zm00001d049263_P001 | Maize | cytosol | 21.46 | 72.46 |
| EES12351 | Sorghum | mitochondrion | 64.38 | 68.49 |
| Os04t0473400-01 | Rice | nucleus, plastid | 65.24 | 68.47 |
| EES07070 | Sorghum | mitochondrion | 63.95 | 68.04 |
| Zm00001d017047_P001 | Maize | plastid | 63.95 | 68.04 |
| Zm00001d050920_P002 | Maize | plastid | 63.95 | 68.04 |
| Zm00001d050921_P002 | Maize | plastid | 63.52 | 67.58 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 61.8 | 65.75 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 61.8 | 65.75 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 61.8 | 65.75 |
| Os02t0591700-01 | Rice | nucleus | 61.37 | 65.3 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 58.8 | 57.56 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 60.09 | 56.45 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 59.66 | 56.05 |
| HORVU6Hr1G052600.3 | Barley | plastid | 61.8 | 55.17 |
| Zm00001d025591_P001 | Maize | cytosol | 41.63 | 42.92 |
| Zm00001d041756_P001 | Maize | plastid | 42.49 | 23.46 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | EntrezGene:838435 | ProteinID:AAF98420.1 | ProteinID:AEE29727.1 |
| ArrayExpress:AT1G18540 | EnsemblPlantsGene:AT1G18540 | RefSeq:AT1G18540 | TAIR:AT1G18540 | RefSeq:AT1G18540-TAIR-G | EnsemblPlants:AT1G18540.1 |
| TAIR:AT1G18540.1 | EMBL:AY054675 | EMBL:AY072496 | GO:GO:0000027 | GO:GO:0002181 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0005886 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009719 | GO:GO:0009735 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0022626 | GO:GO:0030529 | InterPro:IPR014722 |
| RefSeq:NP_173289.1 | PFAM:PF01159 | PFAM:PF03868 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR10715 | UniProt:Q9FZ76 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 |
| InterPro:Translation_prot_SH3-like_sf | UniParc:UPI00000A2A82 | SEG:seg | : | : | : |
Description
RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
Coordinates
chr1:-:6376639..6378580
Molecular Weight (calculated)
26154.2 Da
IEP (calculated)
10.810
GRAVY (calculated)
-0.588
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.