CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74050.1	KRH22291	AT2G42580.1	19000166
AT1G74050.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43315	Soybean	endoplasmic reticulum, nucleus	91.74	96.1
KRH59448	Soybean	endoplasmic reticulum, nucleus	90.5	94.4
KRH43314	Soybean	nucleus	90.5	94.4
KRH43467	Soybean	nucleus	86.78	90.52
KRH13901	Soybean	nucleus	86.36	90.09
VIT_13s0064g01390.t01	Wine grape	cytosol	80.99	84.12
Bra008128.1-P	Field mustard	cytosol	77.27	80.26
Bra015940.1-P	Field mustard	cytosol	77.27	80.26
CDY66361	Canola	cytosol	77.27	80.26
CDX81879	Canola	extracellular	77.27	79.91
AT1G74060.1	Thale cress	cytosol	76.86	79.83
CDX96510	Canola	cytosol	76.86	79.83
Bra031034.1-P	Field mustard	cytosol	76.86	79.49
CDY26150	Canola	cytosol	76.86	79.49
AT1G74050.1	Thale cress	cytosol	76.45	79.4
AT1G18540.1	Thale cress	cytosol	76.03	78.97
CDY45859	Canola	cytosol	75.62	78.88
CDY11078	Canola	cytosol	66.94	78.64
Bra025895.1-P	Field mustard	cytosol	76.03	78.63
CDY21701	Canola	cytosol	76.03	78.63
PGSC0003DMT400034524	Potato	cytosol	74.38	78.6
CDX96716	Canola	cytosol	75.62	78.21
CDY19222	Canola	cytosol	75.62	78.21
Solyc11g012110.1.1	Tomato	nucleus	73.97	78.17
Solyc04g014720.2.1	Tomato	nucleus	73.97	78.17
Solyc05g054070.2.1	Tomato	nucleus	73.97	78.17
GSMUA_Achr3P28460_001	Banana	cytosol	66.53	77.78
CDX83840	Canola	cytosol	75.21	77.78
PGSC0003DMT400060697	Potato	cytosol	73.55	77.73
GSMUA_Achr9P22280_001	Banana	cytosol	66.12	77.29
Bra016555.1-P	Field mustard	cytosol	74.38	76.92
PGSC0003DMT400021753	Potato	cytosol	72.73	76.86
CDX73042	Canola	cytosol	73.97	76.82
GSMUA_Achr4P06390_001	Banana	mitochondrion	73.55	76.07
Zm00001d049263_P001	Maize	cytosol	20.66	72.46
EES12351	Sorghum	mitochondrion	62.81	69.41
Zm00001d050920_P002	Maize	plastid	62.4	68.95
Zm00001d050921_P002	Maize	plastid	61.98	68.49
EES07070	Sorghum	mitochondrion	61.57	68.04
Zm00001d017047_P001	Maize	plastid	61.16	67.58
Os04t0473400-01	Rice	nucleus, plastid	61.98	67.57
Os02t0591700-01	Rice	nucleus	59.5	65.75
TraesCS6A01G204900.1	Wheat	mitochondrion	58.26	64.38
TraesCS6B01G225600.1	Wheat	mitochondrion	58.26	64.38
TraesCS6D01G190100.1	Wheat	nucleus	58.26	64.38
HORVU6Hr1G041750.1	Barley	mitochondrion	57.02	57.98
TraesCS6D01G180100.1	Wheat	mitochondrion	59.09	57.66
TraesCS6B01G230300.2	Wheat	mitochondrion	57.85	56.45
HORVU6Hr1G052600.3	Barley	plastid	57.44	53.26
Zm00001d025591_P001	Maize	cytosol	40.91	43.81
Zm00001d041756_P001	Maize	plastid	40.91	23.46

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	EMBL:ACUP02003324	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G184100
GO:GO:0000027	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	UniProt:I1K4Q4	InterPro:IPR014722
EnsemblPlants:KRH59450	ProteinID:KRH59450	ProteinID:KRH59450.1	PFAM:PF01159	PFAM:PF03868	PANTHER:PTHR10715
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L6_N	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00023C494E	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:37121432..37123006

Molecular Weight (calculated)

26993.2 Da

IEP (calculated)

10.728

GRAVY (calculated)

-0.503

Length

242 amino acids

Sequence
(BLAST)

001: MAPKITRKVS RNPELIRGIG KYSRSQMYHK RGIWAIKAKN GGVLPRHDPK PKPEAPAEKP PKFYPADDIK KPLVNKHKPK PAKLSELIWD LVSEMASITP
101: GTVLILLAGR FKGKRVVFLK QLPSGLLLVT GPFKINGVPL RRVNQSYVIG TSTKVDVSAV NVDQFDDKYF AKEAQKKKKK GEGEFFEAEK EEKSVLPQQK
201: KDDQKTVDSA LIKAIGSVPD LKTYLGARFS LKAGVKPHEL VF

Best Arabidopsis Sequence Match ( AT1G18540.1 )
(BLAST)

001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF

Arabidopsis Description

RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.