Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g014720.2.1 | Tomato | nucleus | 99.13 | 99.13 |
| PGSC0003DMT400034524 | Potato | cytosol | 90.83 | 90.83 |
| PGSC0003DMT400021753 | Potato | cytosol | 88.65 | 88.65 |
| VIT_08s0007g06150.t01 | Wine grape | cytosol | 82.1 | 81.39 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 70.31 | 77.78 |
| CDY11078 | Canola | cytosol | 69.87 | 77.67 |
| KRH43314 | Soybean | nucleus | 78.6 | 77.59 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 78.17 | 77.49 |
| KRH13901 | Soybean | nucleus | 78.17 | 77.16 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 77.73 | 76.72 |
| AT1G74050.1 | Thale cress | cytosol | 77.73 | 76.39 |
| KRH43467 | Soybean | nucleus | 77.29 | 76.29 |
| CDX96716 | Canola | cytosol | 77.73 | 76.07 |
| AT1G18540.1 | Thale cress | cytosol | 77.29 | 75.97 |
| AT1G74060.1 | Thale cress | cytosol | 77.29 | 75.97 |
| Bra008128.1-P | Field mustard | cytosol | 77.29 | 75.97 |
| CDX96510 | Canola | cytosol | 77.29 | 75.97 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 68.56 | 75.85 |
| CDY21701 | Canola | cytosol | 77.29 | 75.64 |
| CDY26150 | Canola | cytosol | 77.29 | 75.64 |
| CDY66361 | Canola | cytosol | 76.86 | 75.54 |
| Bra015940.1-P | Field mustard | cytosol | 76.86 | 75.54 |
| Bra031034.1-P | Field mustard | cytosol | 76.86 | 75.21 |
| CDY19222 | Canola | cytosol | 76.86 | 75.21 |
| CDX81879 | Canola | extracellular | 76.86 | 75.21 |
| Bra025895.1-P | Field mustard | cytosol | 76.42 | 74.79 |
| CDX83840 | Canola | cytosol | 76.42 | 74.79 |
| CDY45859 | Canola | cytosol | 75.55 | 74.57 |
| Bra016555.1-P | Field mustard | cytosol | 75.98 | 74.36 |
| Zm00001d049263_P001 | Maize | cytosol | 22.27 | 73.91 |
| CDX73042 | Canola | cytosol | 75.11 | 73.82 |
| KRH59450 | Soybean | endoplasmic reticulum | 77.73 | 73.55 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 74.67 | 73.08 |
| EES12351 | Sorghum | mitochondrion | 65.94 | 68.95 |
| EES07070 | Sorghum | mitochondrion | 64.63 | 67.58 |
| Zm00001d017047_P001 | Maize | plastid | 64.19 | 67.12 |
| Os04t0473400-01 | Rice | nucleus, plastid | 65.07 | 67.12 |
| Zm00001d050920_P002 | Maize | plastid | 63.76 | 66.67 |
| Zm00001d050921_P002 | Maize | plastid | 63.32 | 66.21 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 62.88 | 65.75 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 62.88 | 65.75 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 62.88 | 65.75 |
| Os02t0591700-01 | Rice | nucleus | 62.88 | 65.75 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 59.39 | 57.14 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 61.57 | 56.85 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 61.14 | 56.45 |
| HORVU6Hr1G052600.3 | Barley | plastid | 62.01 | 54.41 |
| Zm00001d025591_P001 | Maize | cytosol | 41.48 | 42.04 |
| Zm00001d041756_P001 | Maize | plastid | 42.36 | 22.99 |
Protein Annotations
| EntrezGene:102600468 | MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR014722 | UniProt:M1C6A5 | PFAM:PF01159 | PFAM:PF03868 | EnsemblPlantsGene:PGSC0003DMG400023609 | PGSC:PGSC0003DMG400023609 |
| EnsemblPlants:PGSC0003DMT400060697 | PANTHER:PTHR10715 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf |
| UniParc:UPI000294931E | RefSeq:XP_006346775.1 | SEG:seg | : | : | : |
Description
60S ribosomal protein L6 [Source:PGSC_GENE;Acc:PGSC0003DMG400023609]
Coordinates
chr4:+:8727176..8729574
Molecular Weight (calculated)
25632.6 Da
IEP (calculated)
10.884
GRAVY (calculated)
-0.615
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKKTLRNP ELIRGVGKFS RSKMYHKKGL WAIKKKNGGK FPQHQKKPIS APPAEKSPKF YPADDVKKPL VNKHKPKPTK LRASISPGTV LIILAGRFKG
101: KRVVFLKQLL SGLLLVTGPF KLNGVPLRRV NQAYVIGTST KVDVSGVNVE KIDDKYFAKE AEKKQKKGEG EFFEEKKEEK NELPQEKKDS QKAVDASLIK
201: AIEAVPDLKG YLSARFSLKS GMRPHELVF
101: KRVVFLKQLL SGLLLVTGPF KLNGVPLRRV NQAYVIGTST KVDVSGVNVE KIDDKYFAKE AEKKQKKGEG EFFEEKKEEK NELPQEKKDS QKAVDASLIK
201: AIEAVPDLKG YLSARFSLKS GMRPHELVF
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.