Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 5
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P22280_001 | Banana | cytosol | 78.21 | 88.41 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 76.07 | 85.99 |
| KRH43467 | Soybean | nucleus | 77.78 | 78.45 |
| KRH13901 | Soybean | nucleus | 77.78 | 78.45 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 76.07 | 77.06 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 76.5 | 76.82 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 75.64 | 76.29 |
| KRH43314 | Soybean | nucleus | 75.21 | 75.86 |
| PGSC0003DMT400034524 | Potato | cytosol | 73.93 | 75.55 |
| Zm00001d049263_P001 | Maize | cytosol | 22.22 | 75.36 |
| EES12351 | Sorghum | mitochondrion | 70.51 | 75.34 |
| Solyc11g012110.1.1 | Tomato | nucleus | 73.5 | 75.11 |
| Solyc04g014720.2.1 | Tomato | nucleus | 73.5 | 75.11 |
| CDY11078 | Canola | cytosol | 65.81 | 74.76 |
| AT1G74050.1 | Thale cress | cytosol | 74.36 | 74.68 |
| PGSC0003DMT400060697 | Potato | cytosol | 73.08 | 74.67 |
| AT1G74060.1 | Thale cress | cytosol | 73.93 | 74.25 |
| Solyc05g054070.2.1 | Tomato | nucleus | 72.65 | 74.24 |
| PGSC0003DMT400021753 | Potato | cytosol | 72.65 | 74.24 |
| Os04t0473400-01 | Rice | nucleus, plastid | 70.09 | 73.87 |
| Bra015940.1-P | Field mustard | cytosol | 73.5 | 73.82 |
| KRH59450 | Soybean | endoplasmic reticulum | 76.07 | 73.55 |
| CDY66361 | Canola | cytosol | 73.08 | 73.39 |
| Bra008128.1-P | Field mustard | cytosol | 73.08 | 73.39 |
| CDX96510 | Canola | cytosol | 73.08 | 73.39 |
| EES07070 | Sorghum | mitochondrion | 68.38 | 73.06 |
| AT1G18540.1 | Thale cress | cytosol | 72.65 | 72.96 |
| CDY45859 | Canola | cytosol | 71.79 | 72.41 |
| CDY26150 | Canola | cytosol | 72.22 | 72.22 |
| CDX81879 | Canola | extracellular | 72.22 | 72.22 |
| Zm00001d050921_P002 | Maize | plastid | 67.52 | 72.15 |
| Zm00001d050920_P002 | Maize | plastid | 67.52 | 72.15 |
| Bra031034.1-P | Field mustard | cytosol | 71.79 | 71.79 |
| CDY21701 | Canola | cytosol | 71.79 | 71.79 |
| CDX96716 | Canola | cytosol | 71.79 | 71.79 |
| Os02t0591700-01 | Rice | nucleus | 67.09 | 71.69 |
| CDY19222 | Canola | cytosol | 71.37 | 71.37 |
| Bra025895.1-P | Field mustard | cytosol | 71.37 | 71.37 |
| CDX73042 | Canola | cytosol | 70.51 | 70.82 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 66.24 | 70.78 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 66.24 | 70.78 |
| Zm00001d017047_P001 | Maize | plastid | 66.24 | 70.78 |
| CDX83840 | Canola | cytosol | 70.51 | 70.51 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 65.81 | 70.32 |
| Bra016555.1-P | Field mustard | cytosol | 70.09 | 70.09 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 66.24 | 65.13 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 65.81 | 62.1 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 64.96 | 61.29 |
| HORVU6Hr1G052600.3 | Barley | plastid | 64.1 | 57.47 |
| Zm00001d025591_P001 | Maize | cytosol | 43.16 | 44.69 |
| Zm00001d041756_P001 | Maize | plastid | 41.88 | 23.22 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr4G06390_001 |
| EnsemblPlants:GSMUA_Achr4P06390_001 | EnsemblPlants:GSMUA_Achr4T06390_001 | InterPro:IPR014722 | UniProt:M0SLK6 | PFAM:PF01159 | PFAM:PF03868 |
| PANTHER:PTHR10715 | PANTHER:PTHR10715:SF3 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L6_N | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf |
| UniParc:UPI000295C88E | SEG:seg | : | : | : | : |
Description
60S ribosomal protein L6 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06390_001]
Coordinates
chr4:-:4848541..4851414
Molecular Weight (calculated)
26180.1 Da
IEP (calculated)
10.873
GRAVY (calculated)
-0.564
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPKKARMA SRNPSLIRGI GKFSRSKMYH KRGIWAIKAK HCGSFPHHDL KPAPTTPAAV KPPKFYPADD VKTPIPNHRK AKPTKLRASI TPGTVLILLA
101: GRFMGKRVVF LKQLPSGLLL VTGPFKINGV PLRRVNQAYV IGTSTKVDIS QVNTDKFDDK YFTKEKKKTA KKSEGEFFES EKEETKGLPQ EKKDDQKSVD
201: TPLIKAIEAV EDLKTYLGAR FSLRSGMKPH ELVF
101: GRFMGKRVVF LKQLPSGLLL VTGPFKINGV PLRRVNQAYV IGTSTKVDIS QVNTDKFDDK YFTKEKKKTA KKSEGEFFES EKEETKGLPQ EKKDDQKSVD
201: TPLIKAIEAV EDLKTYLGAR FSLRSGMKPH ELVF
001: MPAKQRTAKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPAKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQG KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQG KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6B60S ribosomal protein L6-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.