Factsheet for Bra008128.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74050.1	Bra000267.1-P	AT2G42580.1	19000166
AT1G74050.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66361	Canola	cytosol	98.71	98.71
CDY45859	Canola	cytosol	95.71	96.12
Bra015940.1-P	Field mustard	cytosol	92.7	92.7
Bra031034.1-P	Field mustard	cytosol	91.85	91.45
AT1G74050.1	Thale cress	cytosol	90.99	90.99
AT1G74060.1	Thale cress	cytosol	90.56	90.56
Bra025895.1-P	Field mustard	cytosol	89.7	89.32
Bra016555.1-P	Field mustard	cytosol	88.84	88.46
VIT_13s0064g01390.t01	Wine grape	cytosol	82.4	82.4
KRH43315	Soybean	endoplasmic reticulum, nucleus	80.26	80.95
KRH43314	Soybean	nucleus	78.54	78.88
KRH43467	Soybean	nucleus	78.54	78.88
PGSC0003DMT400034524	Potato	cytosol	77.25	78.6
Solyc11g012110.1.1	Tomato	nucleus	76.82	78.17
KRH13901	Soybean	nucleus	77.68	78.02
KRH59448	Soybean	endoplasmic reticulum, nucleus	77.68	78.02
Solyc04g014720.2.1	Tomato	nucleus	76.39	77.73
GSMUA_Achr3P28460_001	Banana	cytosol	68.67	77.29
Solyc05g054070.2.1	Tomato	nucleus	75.97	77.29
PGSC0003DMT400060697	Potato	cytosol	75.97	77.29
KRH59450	Soybean	endoplasmic reticulum	80.26	77.27
GSMUA_Achr9P22280_001	Banana	cytosol	68.24	76.81
PGSC0003DMT400021753	Potato	cytosol	75.11	76.42
Zm00001d049263_P001	Maize	cytosol	22.32	75.36
GSMUA_Achr4P06390_001	Banana	mitochondrion	73.39	73.08
Zm00001d050920_P002	Maize	plastid	65.24	69.41
EES07070	Sorghum	mitochondrion	65.24	69.41
Zm00001d050921_P002	Maize	plastid	64.81	68.95
EES12351	Sorghum	mitochondrion	64.81	68.95
Zm00001d017047_P001	Maize	plastid	64.81	68.95
Os04t0473400-01	Rice	nucleus, plastid	64.38	67.57
TraesCS6D01G190100.1	Wheat	nucleus	62.23	66.21
TraesCS6A01G204900.1	Wheat	mitochondrion	62.23	66.21
Os02t0591700-01	Rice	nucleus	62.23	66.21
TraesCS6B01G225600.1	Wheat	mitochondrion	61.8	65.75
HORVU6Hr1G041750.1	Barley	mitochondrion	57.94	56.72
HORVU6Hr1G052600.3	Barley	plastid	61.8	55.17
TraesCS6B01G230300.2	Wheat	mitochondrion	58.37	54.84
TraesCS6D01G180100.1	Wheat	mitochondrion	58.37	54.84
Zm00001d025591_P001	Maize	cytosol	42.06	43.36
Zm00001d041756_P001	Maize	plastid	42.06	23.22

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	EnsemblPlantsGene:Bra008128	EnsemblPlants:Bra008128.1	EnsemblPlants:Bra008128.1-P
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	UniProt:M4CV82	PFAM:PF01159	PFAM:PF03868
PANTHER:PTHR10715	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L6_N	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000254578D
SEG:seg	:	:	:	:	:

Description

AT1G74050 (E=1e-103) | 60S ribosomal protein L6 (RPL6C)

Coordinates

chrA02:-:13302512..13303842

Molecular Weight (calculated)

25937.9 Da

IEP (calculated)

10.981

GRAVY (calculated)

-0.583

Length

233 amino acids

Sequence
(BLAST)

001: MPAKQRTPKV SRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVAAVAEK PPKFYPAEDV KKPLANRRKA KPTKLRSSIT PGTVLMILAG
101: RFKGKRVVFL KQLPSGLLLV SGPFKINGVP LRRVNQSYVI GTSTKVDVSG VSLEKFDDKY FGKVAEKKNK KGEGEFFEAE KEEKKAFPQG KKDDQKAVDG
201: ALIKAIESVP ELKTYLGARF SLKQGMKPHE LVF

Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)

001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF

Arabidopsis Description

RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.