Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049263_P001 | Maize | cytosol | 24.78 | 81.16 |
| Zm00001d017047_P001 | Maize | plastid | 54.42 | 56.16 |
| Zm00001d050920_P002 | Maize | plastid | 53.98 | 55.71 |
| Zm00001d050921_P002 | Maize | plastid | 53.54 | 55.25 |
| EES07070 | Sorghum | mitochondrion | 53.54 | 55.25 |
| Os02t0591700-01 | Rice | nucleus | 49.56 | 51.14 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 46.02 | 50.24 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 47.79 | 49.32 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 47.79 | 49.32 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 47.79 | 49.32 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 43.81 | 47.83 |
| CDY11078 | Canola | cytosol | 42.48 | 46.6 |
| AT1G74050.1 | Thale cress | cytosol | 45.58 | 44.21 |
| AT1G74060.1 | Thale cress | cytosol | 45.58 | 44.21 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 48.23 | 43.95 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 48.23 | 43.95 |
| PGSC0003DMT400034524 | Potato | cytosol | 44.25 | 43.67 |
| KRH43467 | Soybean | nucleus | 44.69 | 43.53 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 45.58 | 43.28 |
| CDY21701 | Canola | cytosol | 44.69 | 43.16 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 44.69 | 43.16 |
| Bra015940.1-P | Field mustard | cytosol | 44.25 | 42.92 |
| CDX96510 | Canola | cytosol | 44.25 | 42.92 |
| Solyc11g012110.1.1 | Tomato | nucleus | 43.36 | 42.79 |
| Bra031034.1-P | Field mustard | cytosol | 44.25 | 42.73 |
| KRH13901 | Soybean | nucleus | 43.81 | 42.67 |
| KRH43314 | Soybean | nucleus | 43.81 | 42.67 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 43.81 | 42.49 |
| CDX81879 | Canola | extracellular | 43.81 | 42.31 |
| CDY26150 | Canola | cytosol | 43.81 | 42.31 |
| Bra008128.1-P | Field mustard | cytosol | 43.36 | 42.06 |
| CDY66361 | Canola | cytosol | 43.36 | 42.06 |
| Solyc04g014720.2.1 | Tomato | nucleus | 42.48 | 41.92 |
| PGSC0003DMT400021753 | Potato | cytosol | 42.48 | 41.92 |
| Bra025895.1-P | Field mustard | cytosol | 43.36 | 41.88 |
| CDX96716 | Canola | cytosol | 43.36 | 41.88 |
| CDY19222 | Canola | cytosol | 43.36 | 41.88 |
| CDY45859 | Canola | cytosol | 42.92 | 41.81 |
| HORVU6Hr1G052600.3 | Barley | plastid | 48.23 | 41.76 |
| AT1G18540.1 | Thale cress | cytosol | 42.92 | 41.63 |
| CDX73042 | Canola | cytosol | 42.92 | 41.63 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 42.48 | 41.56 |
| Solyc05g054070.2.1 | Tomato | nucleus | 42.04 | 41.48 |
| PGSC0003DMT400060697 | Potato | cytosol | 42.04 | 41.48 |
| Bra016555.1-P | Field mustard | cytosol | 42.92 | 41.45 |
| CDX83840 | Canola | cytosol | 42.92 | 41.45 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 42.48 | 41.38 |
| KRH59450 | Soybean | endoplasmic reticulum | 43.81 | 40.91 |
| Zm00001d041756_P001 | Maize | plastid | 76.11 | 40.76 |
Protein Annotations
| MapMan:13.2.1.3 | MapMan:17.1.2.1.4 | InterPro:60S_ribosomal_L6E | UniProt:A0A1D6J813 | ProteinID:AQK44061.1 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | PFAM:PF01159 | ScanProsite:PS01170 | PANTHER:PTHR10715 | PANTHER:PTHR10715:SF3 |
| SUPFAM:SSF46785 | SUPFAM:SSF50104 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0008425F74 | InterPro:WH_DNA-bd_sf | EnsemblPlantsGene:Zm00001d025591 |
| EnsemblPlants:Zm00001d025591_P001 | EnsemblPlants:Zm00001d025591_T001 | : | : | : | : |
Description
60S ribosomal protein L6-3
Coordinates
chr10:+:123375775..123377519
Molecular Weight (calculated)
25550.1 Da
IEP (calculated)
9.002
GRAVY (calculated)
-0.215
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKFNNIATQ VEILAKRKLS YCHLAQMKYL FREAIQIKRV LLHDEKSLCM YADMEIILVM DVVEYTSPDH SPSMAICDAF YSKLLTFLDA HQKVPAKEQV
101: DALSTELFAL STVTGPFKIN GVPIRRVNQT YVIATSTKVD ISGVDVSKFD DKYFAREKKQ KVKKTGGELF ETEKEASKSL PDFKKDDQKA VDAALIKAIK
201: AVPELKAYLG ARFSLRDGDK PHEMVF
101: DALSTELFAL STVTGPFKIN GVPIRRVNQT YVIATSTKVD ISGVDVSKFD DKYFAREKKQ KVKKTGGELF ETEKEASKSL PDFKKDDQKA VDAALIKAIK
201: AVPELKAYLG ARFSLRDGDK PHEMVF
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.