Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96510 | Canola | cytosol | 93.2 | 82.4 |
| CDY66361 | Canola | cytosol | 91.26 | 80.69 |
| CDY21701 | Canola | cytosol | 91.26 | 80.34 |
| CDY45859 | Canola | cytosol | 89.32 | 79.31 |
| CDX81879 | Canola | extracellular | 89.81 | 79.06 |
| CDY26150 | Canola | cytosol | 89.81 | 79.06 |
| CDX73042 | Canola | cytosol | 89.32 | 78.97 |
| CDY19222 | Canola | cytosol | 88.83 | 78.21 |
| CDX96716 | Canola | cytosol | 88.35 | 77.78 |
| CDX83840 | Canola | cytosol | 88.35 | 77.78 |
| GSMUA_Achr3P28460_001 | Banana | cytosol | 76.21 | 75.85 |
| GSMUA_Achr9P22280_001 | Banana | cytosol | 75.24 | 74.88 |
| Zm00001d049263_P001 | Maize | cytosol | 24.76 | 73.91 |
| VIT_13s0064g01390.t01 | Wine grape | cytosol | 80.58 | 71.24 |
| PGSC0003DMT400034524 | Potato | cytosol | 79.13 | 71.18 |
| Solyc11g012110.1.1 | Tomato | nucleus | 78.64 | 70.74 |
| Solyc04g014720.2.1 | Tomato | nucleus | 78.16 | 70.31 |
| KRH13901 | Soybean | nucleus | 79.13 | 70.26 |
| KRH43467 | Soybean | nucleus | 79.13 | 70.26 |
| KRH43315 | Soybean | endoplasmic reticulum, nucleus | 78.64 | 70.13 |
| PGSC0003DMT400060697 | Potato | cytosol | 77.67 | 69.87 |
| KRH59448 | Soybean | endoplasmic reticulum, nucleus | 77.67 | 68.97 |
| KRH43314 | Soybean | nucleus | 77.67 | 68.97 |
| PGSC0003DMT400021753 | Potato | cytosol | 76.21 | 68.56 |
| Solyc05g054070.2.1 | Tomato | nucleus | 76.21 | 68.56 |
| KRH59450 | Soybean | endoplasmic reticulum | 78.64 | 66.94 |
| Zm00001d050920_P002 | Maize | plastid | 70.87 | 66.67 |
| EES07070 | Sorghum | mitochondrion | 70.87 | 66.67 |
| Zm00001d050921_P002 | Maize | plastid | 70.39 | 66.21 |
| Zm00001d017047_P001 | Maize | plastid | 70.39 | 66.21 |
| GSMUA_Achr4P06390_001 | Banana | mitochondrion | 74.76 | 65.81 |
| EES12351 | Sorghum | mitochondrion | 68.93 | 64.84 |
| Os04t0473400-01 | Rice | nucleus, plastid | 68.45 | 63.51 |
| TraesCS6A01G204900.1 | Wheat | mitochondrion | 67.48 | 63.47 |
| TraesCS6D01G190100.1 | Wheat | nucleus | 67.48 | 63.47 |
| TraesCS6B01G225600.1 | Wheat | mitochondrion | 66.99 | 63.01 |
| Os02t0591700-01 | Rice | nucleus | 66.02 | 62.1 |
| HORVU6Hr1G041750.1 | Barley | mitochondrion | 62.62 | 54.2 |
| TraesCS6B01G230300.2 | Wheat | mitochondrion | 64.08 | 53.23 |
| HORVU6Hr1G052600.3 | Barley | plastid | 66.99 | 52.87 |
| TraesCS6D01G180100.1 | Wheat | mitochondrion | 63.59 | 52.82 |
| Zm00001d025591_P001 | Maize | cytosol | 46.6 | 42.48 |
| Zm00001d041756_P001 | Maize | plastid | 45.63 | 22.27 |
Protein Annotations
| MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | GO:A0A078FGB5 | UniProt:A0A078FGB5 | EnsemblPlants:CDY11078 |
| ProteinID:CDY11078 | ProteinID:CDY11078.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00049040001 |
| InterPro:IPR014722 | PFAM:PF01159 | PANTHER:PTHR10715 | PANTHER:PTHR10715:SF3 | InterPro:Rib_L2_dom2 | SUPFAM:SSF50104 |
| InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0004EAB9D5 | SEG:seg | : | : | : |
Description
BnaC06g23300DBnaC06g23300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGB5]
Coordinates
chrLK032009:+:75558..76626
Molecular Weight (calculated)
22947.3 Da
IEP (calculated)
10.806
GRAVY (calculated)
-0.540
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MYHKRGLWAI KAKNGGVFPR HDAKSKVDSP AEKPPKFYPA EDVKKPLANR RKPKPTKLRS SITPGTVLII LAGRFKGKRV VFMKQLTSGL LLVSGPFKIN
101: GVPLRRVKQS YVIGTSTKVD ISGVGIHKLD DKYFGKVAEK KNKKAEGEFL EAEKEEKKEI PQGKKDDQKA VDAALIKAIE AVPELKTYLG ARFSLKQGMK
201: PHELVF
101: GVPLRRVKQS YVIGTSTKVD ISGVGIHKLD DKYFGKVAEK KNKKAEGEFL EAEKEEKKEI PQGKKDDQKA VDAALIKAIE AVPELKTYLG ARFSLKQGMK
201: PHELVF
001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF
Arabidopsis Description
RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.