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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 4
  • plastid 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d017047_P001 Maize plastid 96.35 96.35
Zm00001d050920_P002 Maize plastid 95.89 95.89
Zm00001d050921_P002 Maize plastid 94.98 94.98
EES12351 Sorghum mitochondrion 91.32 91.32
TraesCS6D01G190100.1 Wheat nucleus 88.58 88.58
TraesCS6B01G225600.1 Wheat mitochondrion 88.58 88.58
TraesCS6A01G204900.1 Wheat mitochondrion 88.58 88.58
Os02t0591700-01 Rice nucleus 88.58 88.58
HORVU6Hr1G041750.1 Barley mitochondrion 82.65 76.05
TraesCS6D01G180100.1 Wheat mitochondrion 85.39 75.4
TraesCS6B01G230300.2 Wheat mitochondrion 85.39 75.4
GSMUA_Achr9P22280_001 Banana cytosol 71.23 75.36
GSMUA_Achr3P28460_001 Banana cytosol 71.23 75.36
HORVU6Hr1G052600.3 Barley plastid 85.84 72.03
CDY11078 Canola cytosol 66.67 70.87
GSMUA_Achr4P06390_001 Banana mitochondrion 73.06 68.38
PGSC0003DMT400034524 Potato cytosol 70.78 67.69
Bra015940.1-P Field mustard cytosol 71.23 66.95
Solyc11g012110.1.1 Tomato nucleus 69.86 66.81
AT1G74050.1 Thale cress cytosol 70.78 66.52
CDX96510 Canola cytosol 70.78 66.52
AT1G74060.1 Thale cress cytosol 70.32 66.09
VIT_13s0064g01390.t01 Wine grape cytosol 70.32 66.09
KRH43467 Soybean nucleus 69.86 65.95
KRH13901 Soybean nucleus 69.41 65.52
Bra008128.1-P Field mustard cytosol 69.41 65.24
Solyc04g014720.2.1 Tomato nucleus 68.04 65.07
CDY21701 Canola cytosol 69.41 64.96
CDY66361 Canola cytosol 68.95 64.81
KRH43314 Soybean nucleus 68.49 64.66
CDY45859 Canola cytosol 68.49 64.66
PGSC0003DMT400021753 Potato cytosol 67.58 64.63
PGSC0003DMT400060697 Potato cytosol 67.58 64.63
CDY26150 Canola cytosol 68.95 64.53
Bra031034.1-P Field mustard cytosol 68.95 64.53
KRH43315 Soybean endoplasmic reticulum, nucleus 68.04 64.5
Solyc05g054070.2.1 Tomato nucleus 67.12 64.19
CDY19222 Canola cytosol 68.49 64.1
CDX81879 Canola extracellular 68.49 64.1
AT1G18540.1 Thale cress cytosol 68.04 63.95
KRH59448 Soybean endoplasmic reticulum, nucleus 67.58 63.79
Bra025895.1-P Field mustard cytosol 68.04 63.68
CDX73042 Canola cytosol 67.58 63.52
CDX96716 Canola cytosol 67.58 63.25
CDX83840 Canola cytosol 67.12 62.82
Bra016555.1-P Field mustard cytosol 66.67 62.39
KRH59450 Soybean endoplasmic reticulum 68.04 61.57
Zm00001d025591_P001 Maize cytosol 55.25 53.54
Zm00001d041756_P001 Maize plastid 56.62 29.38
Protein Annotations
MapMan:17.1.2.1.4Gene3D:2.30.30.30InterPro:60S_ribosomal_L6EEntrezGene:8055433UniProt:C5XWF4ncoils:Coil
EnsemblPlants:EES07070ProteinID:EES07070ProteinID:EES07070.1GO:GO:0000027GO:GO:0002181GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016043GO:GO:0019538
GO:GO:0022625GO:GO:0030529InterPro:IPR014722PFAM:PF01159ScanProsite:PS01170PANTHER:PTHR10715
PANTHER:PTHR10715:SF3InterPro:Rib_L2_dom2EnsemblPlantsGene:SORBI_3004G198400SUPFAM:SSF50104unigene:Sbi.378InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0001A85DCERefSeq:XP_002454094.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr4:-:54951290..54953033
Molecular Weight (calculated)
24280.7 Da
IEP (calculated)
10.853
GRAVY (calculated)
-0.468
Length
219 amino acids
Sequence
(BLAST)
001: MAPTSKLSMG IKRASRSHAY HRRGLWAIKA KHGGAFPKAE KPAAAAEPKF YPADDVKPRV PSTRKPKPTK LRSSITPGTV LILLAGRFMG KRVVFLKQLK
101: SGLLLVSGPF KINGVPIRRV NQTYVIATST KVDISGVDVA KFDDKYFARE KKQKAKKTEG ELFETEKETS KSLPDFKKDD QKAVDAALIK AIEAVPELKT
201: YLGARFSLRD GDKPHEMVF
Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.