Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 4
- plastid 1
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G74050.1 | EES01073 | AT2G42580.1 | 19000166 |
AT1G74050.1 | EES02247 | AT2G42580.1 | 19000166 |
AT1G74050.1 | OQU78515 | AT2G42580.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d017047_P001 | Maize | plastid | 96.35 | 96.35 |
Zm00001d050920_P002 | Maize | plastid | 95.89 | 95.89 |
Zm00001d050921_P002 | Maize | plastid | 94.98 | 94.98 |
EES12351 | Sorghum | mitochondrion | 91.32 | 91.32 |
TraesCS6D01G190100.1 | Wheat | nucleus | 88.58 | 88.58 |
TraesCS6B01G225600.1 | Wheat | mitochondrion | 88.58 | 88.58 |
TraesCS6A01G204900.1 | Wheat | mitochondrion | 88.58 | 88.58 |
Os02t0591700-01 | Rice | nucleus | 88.58 | 88.58 |
HORVU6Hr1G041750.1 | Barley | mitochondrion | 82.65 | 76.05 |
TraesCS6D01G180100.1 | Wheat | mitochondrion | 85.39 | 75.4 |
TraesCS6B01G230300.2 | Wheat | mitochondrion | 85.39 | 75.4 |
GSMUA_Achr9P22280_001 | Banana | cytosol | 71.23 | 75.36 |
GSMUA_Achr3P28460_001 | Banana | cytosol | 71.23 | 75.36 |
HORVU6Hr1G052600.3 | Barley | plastid | 85.84 | 72.03 |
CDY11078 | Canola | cytosol | 66.67 | 70.87 |
GSMUA_Achr4P06390_001 | Banana | mitochondrion | 73.06 | 68.38 |
PGSC0003DMT400034524 | Potato | cytosol | 70.78 | 67.69 |
Bra015940.1-P | Field mustard | cytosol | 71.23 | 66.95 |
Solyc11g012110.1.1 | Tomato | nucleus | 69.86 | 66.81 |
AT1G74050.1 | Thale cress | cytosol | 70.78 | 66.52 |
CDX96510 | Canola | cytosol | 70.78 | 66.52 |
AT1G74060.1 | Thale cress | cytosol | 70.32 | 66.09 |
VIT_13s0064g01390.t01 | Wine grape | cytosol | 70.32 | 66.09 |
KRH43467 | Soybean | nucleus | 69.86 | 65.95 |
KRH13901 | Soybean | nucleus | 69.41 | 65.52 |
Bra008128.1-P | Field mustard | cytosol | 69.41 | 65.24 |
Solyc04g014720.2.1 | Tomato | nucleus | 68.04 | 65.07 |
CDY21701 | Canola | cytosol | 69.41 | 64.96 |
CDY66361 | Canola | cytosol | 68.95 | 64.81 |
KRH43314 | Soybean | nucleus | 68.49 | 64.66 |
CDY45859 | Canola | cytosol | 68.49 | 64.66 |
PGSC0003DMT400021753 | Potato | cytosol | 67.58 | 64.63 |
PGSC0003DMT400060697 | Potato | cytosol | 67.58 | 64.63 |
CDY26150 | Canola | cytosol | 68.95 | 64.53 |
Bra031034.1-P | Field mustard | cytosol | 68.95 | 64.53 |
KRH43315 | Soybean | endoplasmic reticulum, nucleus | 68.04 | 64.5 |
Solyc05g054070.2.1 | Tomato | nucleus | 67.12 | 64.19 |
CDY19222 | Canola | cytosol | 68.49 | 64.1 |
CDX81879 | Canola | extracellular | 68.49 | 64.1 |
AT1G18540.1 | Thale cress | cytosol | 68.04 | 63.95 |
KRH59448 | Soybean | endoplasmic reticulum, nucleus | 67.58 | 63.79 |
Bra025895.1-P | Field mustard | cytosol | 68.04 | 63.68 |
CDX73042 | Canola | cytosol | 67.58 | 63.52 |
CDX96716 | Canola | cytosol | 67.58 | 63.25 |
CDX83840 | Canola | cytosol | 67.12 | 62.82 |
Bra016555.1-P | Field mustard | cytosol | 66.67 | 62.39 |
KRH59450 | Soybean | endoplasmic reticulum | 68.04 | 61.57 |
Zm00001d025591_P001 | Maize | cytosol | 55.25 | 53.54 |
Zm00001d041756_P001 | Maize | plastid | 56.62 | 29.38 |
Protein Annotations
MapMan:17.1.2.1.4 | Gene3D:2.30.30.30 | InterPro:60S_ribosomal_L6E | EntrezGene:8055433 | UniProt:C5XWF4 | ncoils:Coil |
EnsemblPlants:EES07070 | ProteinID:EES07070 | ProteinID:EES07070.1 | GO:GO:0000027 | GO:GO:0002181 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
GO:GO:0022625 | GO:GO:0030529 | InterPro:IPR014722 | PFAM:PF01159 | ScanProsite:PS01170 | PANTHER:PTHR10715 |
PANTHER:PTHR10715:SF3 | InterPro:Rib_L2_dom2 | EnsemblPlantsGene:SORBI_3004G198400 | SUPFAM:SSF50104 | unigene:Sbi.378 | InterPro:Translation_prot_SH3-like_sf |
UniParc:UPI0001A85DCE | RefSeq:XP_002454094.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:54951290..54953033
Molecular Weight (calculated)
24280.7 Da
IEP (calculated)
10.853
GRAVY (calculated)
-0.468
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTSKLSMG IKRASRSHAY HRRGLWAIKA KHGGAFPKAE KPAAAAEPKF YPADDVKPRV PSTRKPKPTK LRSSITPGTV LILLAGRFMG KRVVFLKQLK
101: SGLLLVSGPF KINGVPIRRV NQTYVIATST KVDISGVDVA KFDDKYFARE KKQKAKKTEG ELFETEKETS KSLPDFKKDD QKAVDAALIK AIEAVPELKT
201: YLGARFSLRD GDKPHEMVF
101: SGLLLVSGPF KINGVPIRRV NQTYVIATST KVDISGVDVA KFDDKYFARE KKQKAKKTEG ELFETEKETS KSLPDFKKDD QKAVDAALIK AIEAVPELKT
201: YLGARFSLRD GDKPHEMVF
001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF
Arabidopsis Description
RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.