CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74050.1	EES01073	AT2G42580.1	19000166
AT1G74050.1	EES02247	AT2G42580.1	19000166
AT1G74050.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07070	Sorghum	mitochondrion	91.32	91.32
Os04t0473400-01	Rice	nucleus, plastid	91.32	90.09
Zm00001d049263_P001	Maize	cytosol	27.85	88.41
GSMUA_Achr9P22280_001	Banana	cytosol	72.6	76.81
GSMUA_Achr3P28460_001	Banana	cytosol	71.69	75.85
GSMUA_Achr4P06390_001	Banana	mitochondrion	75.34	70.51
CDY11078	Canola	cytosol	64.84	68.93
VIT_13s0064g01390.t01	Wine grape	cytosol	72.6	68.24
KRH13901	Soybean	nucleus	72.15	68.1
KRH43467	Soybean	nucleus	71.23	67.24
Solyc11g012110.1.1	Tomato	nucleus	69.86	66.81
PGSC0003DMT400034524	Potato	cytosol	69.41	66.38
Solyc04g014720.2.1	Tomato	nucleus	69.41	66.38
AT1G74050.1	Thale cress	cytosol	70.32	66.09
PGSC0003DMT400060697	Potato	cytosol	68.95	65.94
KRH43315	Soybean	endoplasmic reticulum, nucleus	69.41	65.8
AT1G74060.1	Thale cress	cytosol	69.86	65.67
Solyc05g054070.2.1	Tomato	nucleus	68.04	65.07
CDX81879	Canola	extracellular	69.41	64.96
CDY21701	Canola	cytosol	69.41	64.96
Bra015940.1-P	Field mustard	cytosol	68.95	64.81
Bra008128.1-P	Field mustard	cytosol	68.95	64.81
KRH43314	Soybean	nucleus	68.49	64.66
CDY26150	Canola	cytosol	68.95	64.53
Bra031034.1-P	Field mustard	cytosol	68.95	64.53
CDX96510	Canola	cytosol	68.49	64.38
AT1G18540.1	Thale cress	cytosol	68.49	64.38
CDY66361	Canola	cytosol	68.49	64.38
KRH59448	Soybean	endoplasmic reticulum, nucleus	68.04	64.22
CDY45859	Canola	cytosol	68.04	64.22
PGSC0003DMT400021753	Potato	cytosol	67.12	64.19
CDX96716	Canola	cytosol	68.49	64.1
Bra025895.1-P	Field mustard	cytosol	68.49	64.1
CDY19222	Canola	cytosol	68.49	64.1
CDX83840	Canola	cytosol	67.12	62.82
KRH59450	Soybean	endoplasmic reticulum	69.41	62.81
Bra016555.1-P	Field mustard	cytosol	66.67	62.39
CDX73042	Canola	cytosol	65.3	61.37

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	EntrezGene:8073569	UniProt:C5YAD0	EnsemblPlants:EES12351
ProteinID:EES12351	ProteinID:EES12351.1	GO:GO:0000027	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625
InterPro:IPR014722	PFAM:PF01159	PANTHER:PTHR10715	PANTHER:PTHR10715:SF3	InterPro:Rib_L2_dom2	EnsemblPlantsGene:SORBI_3006G116700
SUPFAM:SSF50104	unigene:Sbi.4442	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001A8710D	RefSeq:XP_002448023.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:48442494..48444724

Molecular Weight (calculated)

24439.8 Da

IEP (calculated)

10.804

GRAVY (calculated)

-0.597

Length

219 amino acids

Sequence
(BLAST)

001: MAPSSKLSQG IKKASRSHAY HRRGLWAIKA KHGGAFPKAE KPAAVAEPKF YPADDVKPRK PSTRKPKPTK LRSSITPGTV LILLAGRFMG KRVVFLKQLK
101: SGLLLVTGPF KINGVPIRRV NQTYTIATST KVDISGVNVE KFDDKYFARE KKKKATKTEG ELFETEKEST KDLPQFKKDD QKAVDTELIK AIDAVPDLKT
201: YLGARFSLRD GDKPHEMVF

Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)

001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF

Arabidopsis Description

RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.