CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74050.1	CDY42827	AT2G42580.1	19000166
AT1G74050.1	CDY51514	AT2G42580.1	19000166
AT1G74050.1	CDY55390	AT2G42580.1	19000166
AT1G74050.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66361	Canola	cytosol	97.41	97.0
Bra008128.1-P	Field mustard	cytosol	96.12	95.71
CDX96510	Canola	cytosol	91.38	90.99
CDY21701	Canola	cytosol	91.38	90.6
CDX81879	Canola	extracellular	90.95	90.17
AT1G74050.1	Thale cress	cytosol	90.09	89.7
CDY11078	Canola	cytosol	79.31	89.32
AT1G74060.1	Thale cress	cytosol	89.66	89.27
CDX73042	Canola	cytosol	89.22	88.84
CDY26150	Canola	cytosol	89.22	88.46
CDX96716	Canola	cytosol	88.36	87.61
CDY19222	Canola	cytosol	88.36	87.61
CDX83840	Canola	cytosol	87.07	86.32
VIT_13s0064g01390.t01	Wine grape	cytosol	81.03	80.69
KRH43315	Soybean	endoplasmic reticulum, nucleus	78.88	79.22
KRH43467	Soybean	nucleus	77.16	77.16
KRH43314	Soybean	nucleus	77.16	77.16
Solyc11g012110.1.1	Tomato	nucleus	75.86	76.86
PGSC0003DMT400034524	Potato	cytosol	75.86	76.86
KRH13901	Soybean	nucleus	76.29	76.29
KRH59448	Soybean	endoplasmic reticulum, nucleus	76.29	76.29
Solyc05g054070.2.1	Tomato	nucleus	75.0	75.98
Solyc04g014720.2.1	Tomato	nucleus	75.0	75.98
GSMUA_Achr3P28460_001	Banana	cytosol	67.67	75.85
KRH59450	Soybean	endoplasmic reticulum	78.88	75.62
PGSC0003DMT400021753	Potato	cytosol	74.57	75.55
PGSC0003DMT400060697	Potato	cytosol	74.57	75.55
Zm00001d049263_P001	Maize	cytosol	22.41	75.36
GSMUA_Achr9P22280_001	Banana	cytosol	66.38	74.4
GSMUA_Achr4P06390_001	Banana	mitochondrion	72.41	71.79
Zm00001d017047_P001	Maize	plastid	65.09	68.95
Zm00001d050920_P002	Maize	plastid	65.09	68.95
Zm00001d050921_P002	Maize	plastid	64.66	68.49
EES07070	Sorghum	mitochondrion	64.66	68.49
EES12351	Sorghum	mitochondrion	64.22	68.04
Os04t0473400-01	Rice	nucleus, plastid	64.66	67.57
Os02t0591700-01	Rice	nucleus	62.5	66.21
TraesCS6A01G204900.1	Wheat	mitochondrion	61.64	65.3
TraesCS6D01G190100.1	Wheat	nucleus	61.64	65.3
TraesCS6B01G225600.1	Wheat	mitochondrion	61.21	64.84
HORVU6Hr1G041750.1	Barley	mitochondrion	57.76	56.3
TraesCS6B01G230300.2	Wheat	mitochondrion	58.19	54.44
TraesCS6D01G180100.1	Wheat	mitochondrion	58.19	54.44
HORVU6Hr1G052600.3	Barley	plastid	61.21	54.41
Zm00001d025591_P001	Maize	cytosol	41.81	42.92
Zm00001d041756_P001	Maize	plastid	41.81	22.99

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	GO:A0A078I8W3	UniProt:A0A078I8W3	EnsemblPlants:CDY45859
ProteinID:CDY45859	ProteinID:CDY45859.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00082814001	InterPro:IPR014722
PFAM:PF01159	PFAM:PF03868	PANTHER:PTHR10715	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L6_N	SUPFAM:SSF50104
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EF09C3	SEG:seg	:	:	:

Description

BnaC02g22610DBnaC02g22610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8W3]

Coordinates

chrLK032639:+:45665..47305

Molecular Weight (calculated)

25879.8 Da

IEP (calculated)

10.899

GRAVY (calculated)

-0.532

Length

232 amino acids

Sequence
(BLAST)

001: MPAKQRTPKV SRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAVAEK PPKFYPAEDV KKPLANRRKA NPTKLRSSIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV SGPFKINGVP LRRVNQSYVI GTSSKVDVSG VILEKFDDKY FGKVAEKKNK KGEGEFFEVE KEEKVFPQGK KDDQKAVDGA
201: LIKAIESVPE LKTYLGARFS LKQGMKPHEL VF

Best Arabidopsis Sequence Match ( AT1G18540.1 )
(BLAST)

001: MPAAKRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA QPKVDAPVEK PAKFYPAEDV KKPLVNRRKP KPTKLKASIT PGTVLIILAG
101: RFKGKRVVFL KQLSSGLLLV TGPFKINGVP LRRVNQAYVI GTSTKIDISG VNTEKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQE KKEDQKTVDA
201: ALIKSIEAVP ELKVYLGARF SLSQGMKPHE LVF

Arabidopsis Description

RPL6A60S ribosomal protein L6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.