Factsheet for Solyc11g012110.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034524	Potato	cytosol	97.38	97.38
Solyc05g054070.2.1	Tomato	nucleus	91.27	91.27
Solyc04g014720.2.1	Tomato	nucleus	90.83	90.83
VIT_08s0007g06150.t01	Wine grape	cytosol	81.66	80.95
CDY11078	Canola	cytosol	70.74	78.64
KRH43467	Soybean	nucleus	79.48	78.45
KRH59448	Soybean	endoplasmic reticulum, nucleus	79.04	78.02
KRH13901	Soybean	nucleus	79.04	78.02
GSMUA_Achr9P22280_001	Banana	cytosol	70.31	77.78
AT1G74050.1	Thale cress	cytosol	79.04	77.68
KRH43314	Soybean	nucleus	78.6	77.59
AT1G74060.1	Thale cress	cytosol	78.6	77.25
KRH43315	Soybean	endoplasmic reticulum, nucleus	77.73	77.06
CDX96510	Canola	cytosol	78.17	76.82
Bra008128.1-P	Field mustard	cytosol	78.17	76.82
AT1G18540.1	Thale cress	cytosol	77.73	76.39
Bra015940.1-P	Field mustard	cytosol	77.73	76.39
CDY66361	Canola	cytosol	77.73	76.39
GSMUA_Achr3P28460_001	Banana	cytosol	69.0	76.33
CDX96716	Canola	cytosol	77.73	76.07
CDY26150	Canola	cytosol	77.73	76.07
CDY21701	Canola	cytosol	77.73	76.07
CDY45859	Canola	cytosol	76.86	75.86
CDX83840	Canola	cytosol	77.29	75.64
CDX81879	Canola	extracellular	77.29	75.64
Bra031034.1-P	Field mustard	cytosol	77.29	75.64
CDY19222	Canola	cytosol	77.29	75.64
Zm00001d049263_P001	Maize	cytosol	22.71	75.36
Bra025895.1-P	Field mustard	cytosol	76.86	75.21
Bra016555.1-P	Field mustard	cytosol	76.86	75.21
KRH59450	Soybean	endoplasmic reticulum	78.17	73.97
CDX73042	Canola	cytosol	75.11	73.82
GSMUA_Achr4P06390_001	Banana	mitochondrion	75.11	73.5
EES07070	Sorghum	mitochondrion	66.81	69.86
EES12351	Sorghum	mitochondrion	66.81	69.86
Zm00001d017047_P001	Maize	plastid	65.94	68.95
Zm00001d050920_P002	Maize	plastid	65.94	68.95
Zm00001d050921_P002	Maize	plastid	65.5	68.49
Os04t0473400-01	Rice	nucleus, plastid	66.38	68.47
TraesCS6B01G225600.1	Wheat	mitochondrion	64.19	67.12
TraesCS6D01G190100.1	Wheat	nucleus	64.19	67.12
TraesCS6A01G204900.1	Wheat	mitochondrion	64.19	67.12
Os02t0591700-01	Rice	nucleus	64.19	67.12
TraesCS6D01G180100.1	Wheat	mitochondrion	63.76	58.87
HORVU6Hr1G041750.1	Barley	mitochondrion	60.7	58.4
TraesCS6B01G230300.2	Wheat	mitochondrion	62.45	57.66
HORVU6Hr1G052600.3	Barley	plastid	63.76	55.94
Zm00001d025591_P001	Maize	cytosol	42.79	43.36
Zm00001d041756_P001	Maize	plastid	44.1	23.93

Protein Annotations

MapMan:17.1.2.1.4	Gene3D:2.30.30.30	InterPro:60S_ribosomal_L6E	GO:GO:0000027	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022625	InterPro:IPR014722	UniProt:K4D616	PFAM:PF01159	PFAM:PF03868	PANTHER:PTHR10715
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L6_N	SUPFAM:SSF50104	EnsemblPlantsGene:Solyc11g012110.1	EnsemblPlants:Solyc11g012110.1.1	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002769DEE	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:5037370..5038787

Molecular Weight (calculated)

25444.5 Da

IEP (calculated)

10.885

GRAVY (calculated)

-0.469

Length

229 amino acids

Sequence
(BLAST)

001: MAAKKTARNP ELIRGVGKFS RSKMYHKKGL WAIKKKNGGA LPVHSKKPAV APVAEKAPKF YPADDVKKPL VNKHKPKPTK LRSSITPGTV LIILAGRFKG
101: KRVVFLKQLV SGLLLVTGPF KFNGVPLRRV NQAYVIGTST KVDISGVNVD KIDDKYFAKQ VEKKQKKGEG EFFEEKKEEK NVLPQEKKDE QKAVDAALIK
201: AIEAVPELKG YLSARFSLKS GMKPHELVF

Best Arabidopsis Sequence Match ( AT1G74050.1 )
(BLAST)

001: MPAKQRTPKV NRNPDLIRGV GKYSRSQMYH KRGLWAIKAK NGGVFPRHDA KSKVDAPVEK PPKFYPAEDV KKPLPNRRTA KPTKLRASIT PGTVLIILAG
101: RFKGKRVVFL KQLASGLLLV TGPFKINGVP LRRVNQAYVI GTSTKVDISG VTLDKFDDKY FGKVAEKKKK KTEGEFFEAE KEEKKEIPQV KKDDQKAVDA
201: ALIKAIEAVP ELKTYLGARF SLKQGMKPHE LVF

Arabidopsis Description

RPL6C60S ribosomal protein L6-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9C5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.